Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq40 91.5 4e-13 seq5 91.5 4e-13 >seq40 Length=1372308 Score = 91.5 bits (100), Expect = 4e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 |||||||||||| | ||| | | || || |||||||||||||| |||||||| || Sbjct 1240797 CAGTTTTATGTAGCGAATGGGGAGTTGTCGTGTCAAATGTATCAGCGCTCTGCTGACATG 1240856 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || ||||| ||||| |||||||||||| || || || || || ||| | || |||||| Sbjct 1240857 GGCCTTGGCGTTCCATTTAATATTGCATCATATGCTCTTCTGACATGCATGATTGCTCAT 1240916 Query 111822 TTT 111824 || Sbjct 1240917 GTT 1240919 >seq5 Length=5307744 Score = 91.5 bits (100), Expect = 4e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 363637 ATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGA 363696 || || || || | ||| || | ||| | |||||| ||||| ||| || || || Sbjct 4279543 ATAGAAGGGATATATGATACCTTAAAGGAGTGTGCTGTTATTAGCAAATCAGCTGGTGGT 4279484 Query 363697 ATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGA 363756 |||||||| || |||||||| ||||||| | |||||||||||| || ||| || Sbjct 4279483 ATTGGTGTTTCCATCCACAACATTCGTGCCATGGGCAGTTACATTCGTGGAACAAATGGG 4279424 Query 363757 TACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGAC 363816 ||| ||||| | || |||||||| || || || | ||||||| | || || || Sbjct 4279423 ACCTCTAATGGAATTGTGCCCATGCTGCGGGTTTTCAATGATACTGCTCGATATGTTGAT 4279364 Query 363817 CAGGGTGGAGGAAAGCGCAAAGG 363839 || || ||||| ||| | ||||| Sbjct 4279363 CAAGGAGGAGGCAAGAGGAAAGG 4279341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303336032422664