Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq14 125 6e-24
seq124 96.9 3e-15
>seq14
Length=2855554
Score = 125 bits (138), Expect = 6e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| ||||| || ||||| || | || || | ||||| ||| | |
Sbjct 999344 ATGCAGATTTTTGTGAAAACCTTGACTGGCAAGACAATCACTTTGGAAGTGGAGAGCTCC 999403
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| ||||| || | || || ||||||| ||||| || ||||| || || || |||
Sbjct 999404 GATACCATTGATAATGTGAAGGCAAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAA 999463
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169
||||| |||| | || ||||||||||||||||||| ||| ||| | ||| ||||| ||
Sbjct 999464 CAGAGGTTGATCTTCGCAGGCAAGCAACTCGAAGATGGCAG-AACTTTAGCAGATTACAA 999522
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
||| ||||| ||||| || | ||||| ||| | ||||| | || ||
Sbjct 999523 CATCCAAAAGGAATCAACTCTGCATTTGGTGCTTCGATTGCGCGGTGG 999570
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| ||||| || ||||| ||| | || ||| | || |||||| |
Sbjct 998888 ATGCAGATTTTTGTTAAAACCTTGACTGGCAAAACAATCACCTTGGAGGTCGAGAGCTCT 998947
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| || ||||| | || ||| ||||| || || || ||||| || || || |||
Sbjct 998948 GATACAATCGATAATGTGAAAGCCAAGATCCAAGATAAGGAGGGCATTCCACCTGACCAA 999007
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| |||| | | || |||||||||||||| | || | | |||||||||
Sbjct 999008 CAGAGGTTGATCTTTGCTGGTAAGCAACTCGAAGACGGTAGGACTCTGGCAGATTATAAC 999067
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
|| || || ||||| ||| | || | ||| | ||||| | || ||
Sbjct 999068 ATCCAGAAGGAATCGACACTGCACCTGGTGCTCCGATTGCGTGGTGG 999114
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || ||||| | ||||| ||| | || ||| |||| || ||
Sbjct 998432 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGTTCG 998491
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| ||||| || | || || |||||| || ||||| || || |||||||| ||
Sbjct 998492 GATACCATTGACAATGTAAAGGCAAAGATCCAAGATAAAGAGGGAATTCCTCCCGACCAG 998551
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| || || || | || || ||||||||||| |||| ||| | | |||||| ||
Sbjct 998552 CAAAGGCTTATCTTCGCTGGTAAGCAACTCGAGGATGGTCGAACCCTTGCCGATTACAAT 998611
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206
|| || || |||||||| ||||| | ||| | |||
Sbjct 998612 ATCCAGAAGGAATCTACTCTTCATCTGGTGCTTAGA 998647
>seq124
Length=632428
Score = 96.9 bits (106), Expect = 3e-15
Identities = 150/212 (71%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
||||||| | || || ||||| | || ||||| | || || | || || || |
Sbjct 447466 AATGCAAATTTTCGTCAAAACGCTCACGGGAAAGACTATCACATTGGAGGTTGAAAGCTC 447407
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
|||||| || || | |||||| |||||| ||||| ||||| || ||||| || ||
Sbjct 447406 CGACACAATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCA 447347
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGTCAGCGATTATA 24168
|| || || |||| || |||||||| || ||||||| || || | | |||||| |
Sbjct 447346 GCAAAGGCTAATTTTCGCAGGCAAGCAGCTTGAAGATGGACGGACTCTTGC-CGATTACA 447288
Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTG 24200
|||||||||| || || || ||||| |||||
Sbjct 447287 ACATTCAAAAGGAGTCAACTCTTCATCTAGTG 447256
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
|||||| | ||||| || || ||||| |||||| | || || | || || |||
Sbjct 447238 AATGCAGATTTTTGTGAAGACCTTAACGGGAAAAACAATCACTCTGGAGGTTGAGAGTTC 447179
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
|| |||||||| | || || || ||| || ||||| ||||| || || || ||
Sbjct 447178 GGATACCATCGACAACGTGAAGGCTAAAATTCAAGATAAAGAGGGCATCCCACCAGACCA 447119
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
||||| ||||||| || || |||||||| ||||| | ||| | | ||| |||||
Sbjct 447118 GCAGAGGCTGATTTTCGCTGGAAAGCAACTGGAAGACGGCAGGACTTTGGCCGACTATAA 447059
Query 24170 CATTCAAAAAGAATCTAC 24187
||||||||||| || ||
Sbjct 447058 TATTCAAAAAGAGTCGAC 447041
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAG-TCGAGGCCAA 24049
|||||| | || || ||||| | ||||||||| | || ||| | || | | || |
Sbjct 354260 ATGCAAATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCTTGGAGGGTGGAAAGCTC 354319
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
|| |||||||| | || || ||||| | || ||||| ||||| || || || ||
Sbjct 354320 TGATACCATCGACAATGTGAARGCCAAGATCAA-GAAAAAGAGGGCATCCCACCAGACCA 354378
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
||||| |||||| || || |||||||| ||| | | ||| | | ||| |||||
Sbjct 354379 GCAGAGGTTGATTTTCGCTGGAAAGCAACTGGAACACGGCAGGACTTTGGCCGACTATAA 354438
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199
|||||||||||| || || | ||||| ||
Sbjct 354439 CATTCAAAAAGAGTCGACTTTGCATTTGGT 354468
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || ||||| | ||||||||| | || ||| | || || || |
Sbjct 447693 ATGCAAATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCTTGGAGGTGGAAAGCTCT 447634
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| |||||||| | || || ||||| || ||||| || || || || || ||
Sbjct 447633 GATACCATCGACAATGTGAAGGCCAAGATCCAAGATAAAGAGGGTATTCCACCGGACCAG 447574
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| ||||||| || || || ||||||||||||| | | | | || || ||
Sbjct 447573 CAGAGGCTGATTTTCGCGGGTAAACAACTCGAAGATGGCCGCACTCTGGCTGACTACAAT 447514
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200
||||| || ||||| ||| | ||||| |||
Sbjct 447513 ATTCAGAAGGAATCAACATTGCATTTGGTG 447484
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429930487683060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |