Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq124 140 3e-28
seq14 111 1e-19
seq21 105 6e-18
seq4 102 8e-17
seq15 98.7 9e-16
>seq124
Length=632428
Score = 140 bits (154), Expect = 3e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||| ||||| ||||| || || | || ||||| ||||| |||||||||||| |
Sbjct 447695 CCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCC 447754
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || ||| || |||||||| || ||| |||||| | |||||||||||| ||
Sbjct 447755 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGA 447814
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|||||||| ||||| ||||| ||| | | || | |||||| | || |
Sbjct 447815 ATTCCTTCCTTGTCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACC 447874
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||||| ||||| ||||| |||||||| || || ||||||||
Sbjct 447875 TCAAGGGTAATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||| | ||| ||||||| ||| | || ||||||||||||||||||||||||
Sbjct 447239 CCACCGCGAAGACGGAGCACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCA 447298
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || || || ||||||||||||||| | |||| | |||||||| ||||||
Sbjct 447299 AGAGTCCGTCCATCTTCAAGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGGAGGG 447358
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|| ||||| ||||| ||| | | || |||| | || | || |||| | || |
Sbjct 447359 ATACCTTCCTTGTC-TTGAATCTTAGCTTTGACATTGTCAATTGTGTCGGAGCTTTCAAC 447417
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | || || || || || ||||| |||||||| |||||
Sbjct 447418 CTCCAATGTGATAGTCTTTCCCGTGAGCGTTTTGACGAAAATTTGCAT 447465
>seq14
Length=2855554
Score = 111 bits (122), Expect = 1e-19
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066
||||||||||| || ||||| ||||| | || || |||||||| ||||||||||| |||
Sbjct 999570 CCACCGCGCAATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 999511
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| | | || | || || || |||||||||||| |||| || | ||| ||||| || ||
Sbjct 999510 AAAGTTCTGCCA-TCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGG 999452
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185
||| || || ||||| ||| | | || ||| | | || | ||||||| | ||| |
Sbjct 999451 GATGCCCTCCTTGTC-TTGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCCA 999393
Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | || || || || | ||||| || |||||||||||
Sbjct 999392 CTTCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344
>seq21
Length=2013095
Score = 105 bits (116), Expect = 6e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078
||| ||||| || || | ||| |||||||| || ||||| || ||| || || |
Sbjct 1809671 ACGAAGCACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTACC 1809612
Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138
|||||| |||||||| || ||| |||| | | ||||||||| || |||||||| |||||
Sbjct 1809611 GTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTT 1809552
Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198
||| ||| || ||| | | || | || || | ||| | || | |||||
Sbjct 1809551 GTCTTGGATCTTAGCCTTTACATTGTCTATGGTGTCCGAACTCTCAACCTCCAGGGTAAT 1809492
Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||||| ||||| | || || ||||||||||||||
Sbjct 1809491 GGTTTTCCCGGTCAACGTCTTGACGAAAATCTGCAT 1809456
>seq4
Length=5448771
Score = 102 bits (112), Expect = 8e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097
|| |||||||| || |||||||||||| | ||| || |||||| |||||||| ||
Sbjct 199577 GTGGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCAAGCTGCTTACCA 199636
Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTG-CTT 131156
|| |||| | ||||||||||||||| || ||||| || ||||| ||| | | || |||
Sbjct 199637 GCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTC-CTGAATCTTTGCCTT 199695
Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216
| | || | ||||||| | ||| | |||| || | ||| || || || | ||
Sbjct 199696 CACATTGTCGATGGTATCGGAGCTCTCAACCTCGAGAGTTATGGTCTTCCCCGTCAACGT 199755
Query 131217 TTTTACGAAAATCTGCAT 131234
||| || || ||||||||
Sbjct 199756 TTTCACAAAGATCTGCAT 199773
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082
||||| | |||| ||| ||||| || || |||||||| ||| | || || |||
Sbjct 205237 AGCACAAGGTGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGACCATCC 205296
Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142
|| |||||||| || || | || | ||||||||||||||| || ||||| || |||||
Sbjct 205297 TCCAGCTGCTTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCC 205356
Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202
|| || ||| | | || | ||||| | ||||| |||| || | |||
Sbjct 205357 TGAATCTTGGCCTTCACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTC 205416
Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| || || || ||||| ||||| ||||||||
Sbjct 205417 TTCCCTGTCAGCGTTTTCACGAAGATCTGCAT 205448
>seq15
Length=2492501
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| || || | || | || |||||||| || ||||||||||| |
Sbjct 255612 CCACCTCGGAGACGAAGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCC 255671
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || | | ||||| |||||||| || || |||| || | ||||||||| |||||
Sbjct 255672 AGAGTCCTCCCATCCTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGA 255731
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
||||| || ||||| || ||| ||| | | || | ||||| | | ||| |
Sbjct 255732 ATTCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCAATCGTATCTGAGCTCTCCACC 255791
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || ||||| || || || ||||| ||||||||
Sbjct 255792 TCCAAGGTGATGGTCTTCCCGGTAAGGGTCTTCACGAAGATCTGCAT 255838
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472006593031680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |