Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq124 140 3e-28 seq14 111 1e-19 seq21 105 6e-18 seq4 102 8e-17 seq15 98.7 9e-16 >seq124 Length=632428 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| ||||| ||||| || || | || ||||| ||||| |||||||||||| | Sbjct 447695 CCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCC 447754 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || |||||||| || ||| |||||| | |||||||||||| || Sbjct 447755 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGA 447814 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||||| ||| | | || | |||||| | || | Sbjct 447815 ATTCCTTCCTTGTCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACC 447874 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||| ||||| |||||||| || || |||||||| Sbjct 447875 TCAAGGGTAATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| ||||||| ||| | || |||||||||||||||||||||||| Sbjct 447239 CCACCGCGAAGACGGAGCACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCA 447298 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || ||||||||||||||| | |||| | |||||||| |||||| Sbjct 447299 AGAGTCCGTCCATCTTCAAGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGGAGGG 447358 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| | | || |||| | || | || |||| | || | Sbjct 447359 ATACCTTCCTTGTC-TTGAATCTTAGCTTTGACATTGTCAATTGTGTCGGAGCTTTCAAC 447417 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || || ||||| |||||||| ||||| Sbjct 447418 CTCCAATGTGATAGTCTTTCCCGTGAGCGTTTTGACGAAAATTTGCAT 447465 >seq14 Length=2855554 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||||||||| || ||||| ||||| | || || |||||||| ||||||||||| ||| Sbjct 999570 CCACCGCGCAATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 999511 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | | || | || || || |||||||||||| |||| || | ||| ||||| || || Sbjct 999510 AAAGTTCTGCCA-TCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGG 999452 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| || || ||||| ||| | | || ||| | | || | ||||||| | ||| | Sbjct 999451 GATGCCCTCCTTGTC-TTGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCCA 999393 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || | ||||| || ||||||||||| Sbjct 999392 CTTCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344 >seq21 Length=2013095 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| ||||| || || | ||| |||||||| || ||||| || ||| || || | Sbjct 1809671 ACGAAGCACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTACC 1809612 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 |||||| |||||||| || ||| |||| | | ||||||||| || |||||||| ||||| Sbjct 1809611 GTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTT 1809552 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| || ||| | | || | || || | ||| | || | ||||| Sbjct 1809551 GTCTTGGATCTTAGCCTTTACATTGTCTATGGTGTCCGAACTCTCAACCTCCAGGGTAAT 1809492 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||||| ||||| | || || |||||||||||||| Sbjct 1809491 GGTTTTCCCGGTCAACGTCTTGACGAAAATCTGCAT 1809456 >seq4 Length=5448771 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || |||||||||||| | ||| || |||||| |||||||| || Sbjct 199577 GTGGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCAAGCTGCTTACCA 199636 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTG-CTT 131156 || |||| | ||||||||||||||| || ||||| || ||||| ||| | | || ||| Sbjct 199637 GCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTC-CTGAATCTTTGCCTT 199695 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | | || | ||||||| | ||| | |||| || | ||| || || || | || Sbjct 199696 CACATTGTCGATGGTATCGGAGCTCTCAACCTCGAGAGTTATGGTCTTCCCCGTCAACGT 199755 Query 131217 TTTTACGAAAATCTGCAT 131234 ||| || || |||||||| Sbjct 199756 TTTCACAAAGATCTGCAT 199773 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 ||||| | |||| ||| ||||| || || |||||||| ||| | || || ||| Sbjct 205237 AGCACAAGGTGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGACCATCC 205296 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || |||||||| || || | || | ||||||||||||||| || ||||| || ||||| Sbjct 205297 TCCAGCTGCTTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCC 205356 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 || || ||| | | || | ||||| | ||||| |||| || | ||| Sbjct 205357 TGAATCTTGGCCTTCACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTC 205416 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || ||||| ||||| |||||||| Sbjct 205417 TTCCCTGTCAGCGTTTTCACGAAGATCTGCAT 205448 >seq15 Length=2492501 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | || |||||||| || ||||||||||| | Sbjct 255612 CCACCTCGGAGACGAAGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCC 255671 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | | ||||| |||||||| || || |||| || | ||||||||| ||||| Sbjct 255672 AGAGTCCTCCCATCCTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGA 255731 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| || ||| ||| | | || | ||||| | | ||| | Sbjct 255732 ATTCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCAATCGTATCTGAGCTCTCCACC 255791 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 255792 TCCAAGGTGATGGTCTTCCCGGTAAGGGTCTTCACGAAGATCTGCAT 255838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472006593031680