Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq4 104 2e-17 seq14 102 7e-17 seq124 98.7 8e-16 seq15 91.5 1e-13 seq21 84.2 2e-11 >seq4 Length=5448771 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| | || | || |||||||||||||| || |||||||| ||||| Sbjct 199547 CCACCACGGAGCCTTAACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCT 199606 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | ||||||| | || || || ||| | || || ||||| |||||| || Sbjct 199607 AGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGT 199666 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || ||||| |||||| | | | | || ||| | ||| Sbjct 199667 ATTCCCTCCTTGTCCTGAATCTTTGC--CTTCACATTGTCGATGGTATCGGAGCTCTCAA 199724 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | || ||||| || || |||| |||||| ||||| |||||||| ||| Sbjct 199725 CCTCGAGAGTTATGGTCTTCCCCGTCAACGTTTTCACAAAGATCTGCATATTG 199777 >seq14 Length=2855554 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||||| || || |||||||| |||||||| || || | ||| || | || Sbjct 999555 AGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCTAAAGTTCTGCCATCT 999496 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||| ||||| || | || | || ||||||||| || | |||||| ||||| Sbjct 999495 TCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCT 999436 Query 16844 GCAAT--TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 ||| |||| |||||| | | | || ||| | |||| ||||| ||||| | Sbjct 999435 TGAATCTTTGC--CTTCACATTATCAATGGTATCGGAGCTCTCCACTTCCAAAGTGATTG 999378 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || |||| ||||| |||||||||||||| Sbjct 999377 TCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| ||||| | || || |||| ||||| || || ||||| ||||||||||| || || Sbjct 999343 CCCGCCTCGCAACCGAAGCACCAAGTGCAGTGTCGATTCCTTCTGTATGTTGTAATCTGC 999284 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | | || || | ||| || || ||| | || |||| ||||||||| || Sbjct 999283 CAGAGTCCTACCATCTTCTAGTTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCAGGTGG 999224 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || || ||| ||||| | | | | || || | |||| Sbjct 999223 GATGCCCTCCTTGTCTTGGATCTTGGCT--TTCACATTGTCAATGGTATCAGAGCTCTCC 999166 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||| || || || |||| || || |||||||||||||| Sbjct 999165 ACTTCCAAAGTGATCGTCTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 999116 >seq124 Length=632428 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 |||||||| |||| || ||||| ||||| || || |||||||||| || || |||| Sbjct 447025 CAGTACCAAATGCGAAGTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGTC 447084 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| ||| || || || |||| |||| ||| ||||| || | ||||||||| || Sbjct 447085 TTCCAGTTGCTTTCCAGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTATC 447144 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 ||||| |||||| | | | | || || ||| |||| ||||| || Sbjct 447145 TTGAATTTTAGCCTTCACGTTGTCGATGGTATCCGAACTCTCAACCTCCAGAGTGATTGT 447204 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||||| || | || || ||||||||||||||| Sbjct 447205 TTTTCCCGTTAAGGTCTTCACAAAAATCTGCATT 447238 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || || ||||| || || |||||||| |||| || | | || Sbjct 447482 AGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCAGCCAGAGTGCGGCCATCT 447541 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | |||||| ||||| |||| |||| ||| |||||| || | |||||||| || Sbjct 447542 TCGAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATACCCTCTTTATCT 447601 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | | || || | ||| |||| |||||||| Sbjct 447602 TGGATCTTGGC--CTTCACATTGTCGATGGTATCAGAGCTTTCCACCTCCAAGGTGATGG 447659 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| || || ||||| || || || ||||| Sbjct 447660 TTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693 >seq15 Length=2492501 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | || || | || || ||||||||||| || |||||||| || ||| Sbjct 255612 CCACCTCGGAGACGAAGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCC 255671 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || || || ||| | || | || ||| ||||| ||| Sbjct 255672 AGAGTCCTCCCATCCTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGA 255731 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||| | | |||||| | | | | || || | |||| Sbjct 255732 ATTCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCAATCGTATCTGAGCTCTCCACC 255791 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||||||| || ||||| || || || || || ||||||||| Sbjct 255792 TCCAAGGTGATGGTCTTCCCGGTAAGGGTCTTCACGAAGATCTGCATT 255839 >seq21 Length=2013095 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | || || ||||||||||| || || ||||| || || Sbjct 1809910 CCACCACGGAGACGCAGGACAAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCAGCG 1809851 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || || || || |||| |||| || || ||| ||| Sbjct 1809850 AGAGTCCTTCCATCCTCCAGCTGCTTCCCTGCGAAAATCAGCCTTTGCTGATCCGGAGGA 1809791 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| ||||| ||| ||||| | | | | |||||| | |||| Sbjct 1809790 ATACCCTCCTTGTCCTGAATTTTGGCT--TTCACATTGTCAATGGTGTCGGAGCTCTCCA 1809733 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || |||| ||||| ||||| || ||||| Sbjct 1809732 CCTCCAGAGTGATGGTCTTCCCAGTCAAGGTTTTCACAAAGATTTGCAT 1809684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405082806265480