Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq4 104 2e-17
seq14 102 7e-17
seq124 98.7 8e-16
seq15 91.5 1e-13
seq21 84.2 2e-11
>seq4
Length=5448771
Score = 104 bits (114), Expect = 2e-17
Identities = 164/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || ||||| | || | || |||||||||||||| || |||||||| |||||
Sbjct 199547 CCACCACGGAGCCTTAACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCT 199606
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| |||| | ||||||| | || || || ||| | || || ||||| |||||| ||
Sbjct 199607 AGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGT 199666
Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| ||||| || ||||| |||||| | | | | || ||| | |||
Sbjct 199667 ATTCCCTCCTTGTCCTGAATCTTTGC--CTTCACATTGTCGATGGTATCGGAGCTCTCAA 199724
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|| | || ||||| || || |||| |||||| ||||| |||||||| |||
Sbjct 199725 CCTCGAGAGTTATGGTCTTCCCCGTCAACGTTTTCACAAAGATCTGCATATTG 199777
>seq14
Length=2855554
Score = 102 bits (112), Expect = 7e-17
Identities = 152/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| |||||| || || |||||||| |||||||| || || | ||| || | ||
Sbjct 999555 AGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCTAAAGTTCTGCCATCT 999496
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|| | ||| ||||| || | || | || ||||||||| || | |||||| |||||
Sbjct 999495 TCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCT 999436
Query 16844 GCAAT--TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
||| |||| |||||| | | | || ||| | |||| ||||| ||||| |
Sbjct 999435 TGAATCTTTGC--CTTCACATTATCAATGGTATCGGAGCTCTCCACTTCCAAAGTGATTG 999378
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || || |||| ||||| ||||||||||||||
Sbjct 999377 TCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
||| ||||| | || || |||| ||||| || || ||||| ||||||||||| || ||
Sbjct 999343 CCCGCCTCGCAACCGAAGCACCAAGTGCAGTGTCGATTCCTTCTGTATGTTGTAATCTGC 999284
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
|| || | | || || | ||| || || ||| | || |||| ||||||||| ||
Sbjct 999283 CAGAGTCCTACCATCTTCTAGTTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCAGGTGG 999224
Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885
| |||||| ||||| || || ||| ||||| | | | | || || | ||||
Sbjct 999223 GATGCCCTCCTTGTCTTGGATCTTGGCT--TTCACATTGTCAATGGTATCAGAGCTCTCC 999166
Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||||| ||||| || || || |||| || || ||||||||||||||
Sbjct 999165 ACTTCCAAAGTGATCGTCTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 999116
>seq124
Length=632428
Score = 98.7 bits (108), Expect = 8e-16
Identities = 150/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
|||||||| |||| || ||||| ||||| || || |||||||||| || || ||||
Sbjct 447025 CAGTACCAAATGCGAAGTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGTC 447084
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
|||| ||| || || || |||| |||| ||| ||||| || | ||||||||| ||
Sbjct 447085 TTCCAGTTGCTTTCCAGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTATC 447144
Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902
||||| |||||| | | | | || || ||| |||| ||||| ||
Sbjct 447145 TTGAATTTTAGCCTTCACGTTGTCGATGGTATCCGAACTCTCAACCTCCAGAGTGATTGT 447204
Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|||||| || | || || |||||||||||||||
Sbjct 447205 TTTTCCCGTTAAGGTCTTCACAAAAATCTGCATT 447238
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||| || || ||||| || || |||||||| |||| || | | ||
Sbjct 447482 AGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCAGCCAGAGTGCGGCCATCT 447541
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|| | |||||| ||||| |||| |||| ||| |||||| || | |||||||| ||
Sbjct 447542 TCGAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATACCCTCTTTATCT 447601
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || |||||| | | | | || || | ||| |||| ||||||||
Sbjct 447602 TGGATCTTGGC--CTTCACATTGTCGATGGTATCAGAGCTTTCCACCTCCAAGGTGATGG 447659
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||||||| || || ||||| || || || |||||
Sbjct 447660 TTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693
>seq15
Length=2492501
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| ||||| || | || || | || || ||||||||||| || |||||||| || |||
Sbjct 255612 CCACCTCGGAGACGAAGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCC 255671
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | | ||||||| || || || ||| | || | || ||| ||||| |||
Sbjct 255672 AGAGTCCTCCCATCCTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGA 255731
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||||| ||||| ||| | | |||||| | | | | || || | ||||
Sbjct 255732 ATTCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCAATCGTATCTGAGCTCTCCACC 255791
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|||| ||||||||| || ||||| || || || || || |||||||||
Sbjct 255792 TCCAAGGTGATGGTCTTCCCGGTAAGGGTCTTCACGAAGATCTGCATT 255839
>seq21
Length=2013095
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | ||| || | || || ||||||||||| || || ||||| || ||
Sbjct 1809910 CCACCACGGAGACGCAGGACAAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCAGCG 1809851
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | | ||||||| || || || || |||| |||| || || ||| |||
Sbjct 1809850 AGAGTCCTTCCATCCTCCAGCTGCTTCCCTGCGAAAATCAGCCTTTGCTGATCCGGAGGA 1809791
Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| ||||| ||||| ||| ||||| | | | | |||||| | ||||
Sbjct 1809790 ATACCCTCCTTGTCCTGAATTTTGGCT--TTCACATTGTCAATGGTGTCGGAGCTCTCCA 1809733
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| |||||||| || || |||| ||||| ||||| || |||||
Sbjct 1809732 CCTCCAGAGTGATGGTCTTCCCAGTCAAGGTTTTCACAAAGATTTGCAT 1809684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405082806265480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |