Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq124 113 3e-20 seq14 104 2e-17 seq137 93.3 3e-14 seq21 87.8 1e-12 seq105 84.2 1e-11 >seq124 Length=632428 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | ||||| | |||||| || || ||| ||| ||||| || |||||||| | | Sbjct 447695 CCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCC 447754 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || ||||| || || ||||| | || || || | || Sbjct 447755 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGA 447814 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| |||||| ||| ||||| | | |||||| ||||||||| Sbjct 447815 ATTCCTTCCTTGTCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACC 447874 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||||| ||||| || || | |||||||| ||||||||||| Sbjct 447875 TCAAGGGTAATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921 Score = 100 bits (110), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACA---CCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATC 38146 |||||| | | ||||| || ||||||| ||| ||| ||||||||||| || || Sbjct 447007 ACCACCACGAAGACGCAGCAGTACCAAATGCGAAGTCGACTCTTTTTGAATATTATAGTC 447066 Query 38147 AGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 | |||| | |||| || | ||| ||||| || || || || | || || || | Sbjct 447067 GGCCAAAGTCCTGCCGTCTTCCAGTTGCTTTCCAGCGAAAATCAGCCTCTGCTGGTCTGG 447126 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266 |||| ||| ||||| || |||||| |||||| || | || ||||| ||| || Sbjct 447127 TGGGATGCCCTCTTTATCTTGAATTTTAGCCTTCACGTTGTCGATGGTATCCGAACTCTC 447186 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || | || || ||||| ||||| ||||| ||||| || |||||||| Sbjct 447187 AACCTCCAGAGTGATTGTTTTTCCCGTTAAGGTCTTCACAAAAATCTGCAT 447237 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | ||| | ||||||||| |||||||||||| ||||||| Sbjct 447235 CATT-CCACCGCGAAGACGGAGCACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAAT 447293 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | | | ||| | || || | || || || || || ||||| | ||| || || | Sbjct 447294 CGGCAAGAGTCCGTCCATCTTCAAGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTG 447353 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| ||| || || ||||| | | || || |||| Sbjct 447354 GAGGGATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATTGTGTCGGAGCTTT 447413 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||| ||||| || ||||| | ||||| ||||| || ||||| Sbjct 447414 CAACCTCCAATGTGATAGTCTTTCCCGTGAGCGTTTTGACGAAAATTTGCAT 447465 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | ||||||||| | || ||||| ||||||||||| |||| || | || | Sbjct 447478 ACGAAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCAGCCAGAGTGCGGCC 447537 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | |||||| || || || || || | || || || | || | || ||||| Sbjct 447538 ATCTTCGAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATACCCTCTTT 447597 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 || || || ||||||||| | || ||||| ||||| || || || || || Sbjct 447598 ATCTTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGCTTTCCACCTCCAAGGTGAT 447657 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || | |||||||||||| || ||||| Sbjct 447658 GGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693 >seq14 Length=2855554 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | ||| || | ||||||||| ||||| |||||||| || |||||||| | Sbjct 999570 CCACCGCGCAATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 999511 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| | | || || | ||| || || || || || | | ||||| || | ||| Sbjct 999510 AAAGTTCTGCCATCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGG 999451 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || ||||| ||| ||| ||||||||| | | ||||| || || ||| Sbjct 999450 ATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCCACT 999391 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || |||||||||||||| || |||||||| Sbjct 999390 TCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344 >seq137 Length=592876 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||||||||| |||||| ||||||||| ||||||||||| ||||||| |||| | Sbjct 233175 CTCTCTTTTCAAAGTTTTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGATCTCTC 233116 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 233115 GCCCATATTTAGCCTT 233100 >seq21 Length=2013095 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||||| || | ||||||||| |||||| |||||||||||||||| Sbjct 1809911 ACCACCACGGAGACGCAGGACAAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCAGC 1809852 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | | | | || || | || || || || || || || | ||| ||||| | || Sbjct 1809851 GAGAGTCCTTCCATCCTCCAGCTGCTTCCCTGCGAAAATCAGCCTTTGCTGATCCGGAGG 1809792 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | || || |||||| |||||| |||||||| | | || || || || || Sbjct 1809791 AATACCCTCCTTGTCCTGAATTTTGGCTTTCACATTGTCAATGGTGTCGGAGCTCTCCAC 1809732 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || |||||||||||||| || || ||||| Sbjct 1809731 CTCCAGAGTGATGGTCTTCCCAGTCAAGGTTTTCACAAAGATTTGCAT 1809684 >seq105 Length=778250 Score = 84.2 bits (92), Expect = 1e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 ||||| |||||||| ||||||| ||||| ||| ||||||||||| |||||||||||| || Sbjct 478331 TCTCTTTTCAAAGTCCTTTTCATCTTTCTCTCGCGGTACTTGTTTGCTATCGGTCTCCCG 478390 Query 20008 GTAATATTTAGCCTTA 20023 ||||||| | ||| Sbjct 478391 CCCATATTTAACTTTA 478406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334942905558212