Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq124 113 3e-20
seq14 104 2e-17
seq137 93.3 3e-14
seq21 87.8 1e-12
seq105 84.2 1e-11
>seq124
Length=632428
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | ||||| | |||||| || || ||| ||| ||||| || |||||||| | |
Sbjct 447695 CCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCC 447754
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || |||| || | || ||||| || || ||||| | || || || | ||
Sbjct 447755 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGA 447814
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||||| |||||| |||||| ||| ||||| | | |||||| |||||||||
Sbjct 447815 ATTCCTTCCTTGTCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACC 447874
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | ||||| ||||| || || | |||||||| |||||||||||
Sbjct 447875 TCAAGGGTAATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921
Score = 100 bits (110), Expect = 2e-16
Identities = 161/231 (70%), Gaps = 3/231 (1%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACA---CCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATC 38146
|||||| | | ||||| || ||||||| ||| ||| ||||||||||| || ||
Sbjct 447007 ACCACCACGAAGACGCAGCAGTACCAAATGCGAAGTCGACTCTTTTTGAATATTATAGTC 447066
Query 38147 AGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206
| |||| | |||| || | ||| ||||| || || || || | || || || |
Sbjct 447067 GGCCAAAGTCCTGCCGTCTTCCAGTTGCTTTCCAGCGAAAATCAGCCTCTGCTGGTCTGG 447126
Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266
|||| ||| ||||| || |||||| |||||| || | || ||||| ||| ||
Sbjct 447127 TGGGATGCCCTCTTTATCTTGAATTTTAGCCTTCACGTTGTCGATGGTATCCGAACTCTC 447186
Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||| || | || || ||||| ||||| ||||| ||||| || ||||||||
Sbjct 447187 AACCTCCAGAGTGATTGTTTTTCCCGTTAAGGTCTTCACAAAAATCTGCAT 447237
Score = 95.1 bits (104), Expect = 8e-15
Identities = 161/232 (69%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| ||||| | | ||| | ||| | ||||||||| |||||||||||| |||||||
Sbjct 447235 CATT-CCACCGCGAAGACGGAGCACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAAT 447293
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
| | | | ||| | || || | || || || || || ||||| | ||| || || |
Sbjct 447294 CGGCAAGAGTCCGTCCATCTTCAAGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTG 447353
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
|||| ||||| ||||| ||| || || ||||| | | || || ||||
Sbjct 447354 GAGGGATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATTGTGTCGGAGCTTT 447413
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| || ||||| ||||| || ||||| | ||||| ||||| || |||||
Sbjct 447414 CAACCTCCAATGTGATAGTCTTTCCCGTGAGCGTTTTGACGAAAATTTGCAT 447465
Score = 84.2 bits (92), Expect = 1e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161
||| | ||||||||| | || ||||| ||||||||||| |||| || | || |
Sbjct 447478 ACGAAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCAGCCAGAGTGCGGCC 447537
Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221
|| || | |||||| || || || || || | || || || | || | || |||||
Sbjct 447538 ATCTTCGAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATACCCTCTTT 447597
Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281
|| || || ||||||||| | || ||||| ||||| || || || || ||
Sbjct 447598 ATCTTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGCTTTCCACCTCCAAGGTGAT 447657
Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||| || || | |||||||||||| || |||||
Sbjct 447658 GGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693
>seq14
Length=2855554
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | ||| || | ||||||||| ||||| |||||||| || |||||||| |
Sbjct 999570 CCACCGCGCAATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 999511
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
||| | | || || | ||| || || || || || | | ||||| || | |||
Sbjct 999510 AAAGTTCTGCCATCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGG 999451
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| || ||||| ||| ||| ||||||||| | | ||||| || || |||
Sbjct 999450 ATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCCACT 999391
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || || || || || || |||||||||||||| || ||||||||
Sbjct 999390 TCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344
>seq137
Length=592876
Score = 93.3 bits (102), Expect = 3e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| ||||||||| |||||| ||||||||| ||||||||||| ||||||| |||| |
Sbjct 233175 CTCTCTTTTCAAAGTTTTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGATCTCTC 233116
Query 20007 GGTAATATTTAGCCTT 20022
| ||||||||||||
Sbjct 233115 GCCCATATTTAGCCTT 233100
>seq21
Length=2013095
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | | ||||| || | ||||||||| |||||| ||||||||||||||||
Sbjct 1809911 ACCACCACGGAGACGCAGGACAAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCAGC 1809852
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
| | | | | || || | || || || || || || || | ||| ||||| | ||
Sbjct 1809851 GAGAGTCCTTCCATCCTCCAGCTGCTTCCCTGCGAAAATCAGCCTTTGCTGATCCGGAGG 1809792
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| || || |||||| |||||| |||||||| | | || || || || ||
Sbjct 1809791 AATACCCTCCTTGTCCTGAATTTTGGCTTTCACATTGTCAATGGTGTCGGAGCTCTCCAC 1809732
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || || || |||||||||||||| || || |||||
Sbjct 1809731 CTCCAGAGTGATGGTCTTCCCAGTCAAGGTTTTCACAAAGATTTGCAT 1809684
>seq105
Length=778250
Score = 84.2 bits (92), Expect = 1e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007
||||| |||||||| ||||||| ||||| ||| ||||||||||| |||||||||||| ||
Sbjct 478331 TCTCTTTTCAAAGTCCTTTTCATCTTTCTCTCGCGGTACTTGTTTGCTATCGGTCTCCCG 478390
Query 20008 GTAATATTTAGCCTTA 20023
||||||| | |||
Sbjct 478391 CCCATATTTAACTTTA 478406
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334942905558212
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |