Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq14 123 2e-23
seq124 122 8e-23
seq4 107 2e-18
seq21 93.3 4e-14
seq60 84.2 2e-11
>seq14
Length=2855554
Score = 123 bits (136), Expect = 2e-23
Identities = 158/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| ||||| || || | ||||| | ||||||||| |||
Sbjct 999116 ATGCAGATTTTTGTGAAGACCTTGACAGGCAAGACGATCACTTTGGAAGTGGAGAGCTCT 999175
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| || || || || || |||| || | || ||||| || || || |||||||||
Sbjct 999176 GATACCATTGA--CAATGTGAAAGCCAAGATCCAA-GACAAGGAGGGCATCCCACCTGAC 999232
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||| || | || ||||| || || ||| ||||||||| | | ||| ||| ||||||
Sbjct 999233 CAACAGAGGCTGATCTTTGCTGGTAAGCAACTAGAAGATGGTAGGACTCTGGCAGATTAC 999292
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || ||||| || || || || |||||
Sbjct 999293 AACATACAGAAGGAATCGACACTGCACTTGGTGCT 999327
Score = 105 bits (116), Expect = 6e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||||||||| ||||| | || || ||| ||||||| | || ||||| |||
Sbjct 998660 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATCACGCTTGAGGTGGAAAGTTCT 998719
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| || || || ||||| |||||| || || || || || || ||||| |||
Sbjct 998720 GATACGATTGACAATGTGAAGGCTAAAATCCAAGATAAGGAGGGTATCCCTCCTGATCAA 998779
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | |||||||| || || || | || || | || ||| | | || ||||||
Sbjct 998780 CAGAGGCTGATTTTTGCTGGTAAGCAGCTTGAGGACGGCCGTACTCTTGCTGACTACAAT 998839
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
|| || |||||||| || | ||||| ||||| ||||
Sbjct 998840 ATCCAGAAAGAATCTACTTTGCATTTGGTGCTTCGGCT 998877
Score = 98.7 bits (108), Expect = 9e-16
Identities = 155/220 (70%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || ||| | || || ||| | ||||| |||| ||||| ||
Sbjct 998432 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGTTCG 998491
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || || || || || ||| ||| ||| || ||||| || ||||| || ||||
Sbjct 998492 GATACCATTGA--CAATGTAAAGGCAAAGATCCAAGATAAAGAGGGAATTCCTCCCGACC 998549
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || || |||| || || || || ||| | || |||| ||| || | | ||||||||
Sbjct 998550 AGCAAAGGCTTATCTTCGCTGGTAAGCAACTCGAGGATGGTCGAACCCTTGCCGATTACA 998609
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
|||| || || ||||| || || ||| | ||||| || ||
Sbjct 998610 ATATCCAGAAGGAATCTACTCTTCATCTGGTGCTTAGACT 998649
Score = 98.7 bits (108), Expect = 9e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || ||||| || ||| | ||||| | || || ||| |||
Sbjct 998888 ATGCAGATTTTTGTTAAAACCTTGACTGGCAAAACAATCACCTTGGAGGTCGAGAGCTCT 998947
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| || ||||| |||| || ||| || || || || |||||||||||||||
Sbjct 998948 GATACAATCGATAATGTGAAAGCCAAGATCCAAGATAAGGAGGGCATTCCACCTGACCAA 999007
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||| || || ||| | ||||| | | | ||| ||| ||||| ||
Sbjct 999008 CAGAGGTTGATCTTTGCTGGTAAGCAACTCGAAGACGGTAGGACTCTGGCAGATTATAAC 999067
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || ||||| || || || | |||||
Sbjct 999068 ATCCAGAAGGAATCGACACTGCACCTGGTGCT 999099
>seq124
Length=632428
Score = 122 bits (134), Expect = 8e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || || | || || ||| ||||||| | || ||||| |||
Sbjct 447693 ATGCAAATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCTTGGAGGTGGAAAGCTCT 447634
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| || ||||| ||||| || ||| || ||||| || |||||||| |||||
Sbjct 447633 GATACCATCGACAATGTGAAGGCCAAGATCCAAGATAAAGAGGGTATTCCACCGGACCAG 447574
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | ||||| || || |||||| | ||||||| |||||| ||| || ||||||
Sbjct 447573 CAGAGGCTGATTTTCGCGGGTAAACAACTCGAAGATGGCCGCACTCTGGCTGACTACAAT 447514
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || ||||| || | ||||| |||||
Sbjct 447513 ATTCAGAAGGAATCAACATTGCATTTGGTGCT 447482
Score = 100 bits (110), Expect = 2e-16
Identities = 143/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| ||||| || || || ||| | ||||| | || || ||| ||
Sbjct 447238 AATGCAGATTTTTGTGAAGACCTTAACGGGAAAAACAATCACTCTGGAGGTTGAGAGTTC 447179
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || ||||| ||||| | |||| ||| || ||||| || || ||||| ||||
Sbjct 447178 GGATACCATCGACAACGTGAAGGCTAAAATTCAA-GATAAAGAGGGCATCCCACCAGACC 447120
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||| || | ||||| || || || ||| | ||||| | | ||| ||| ||| || |
Sbjct 447119 AGCAGAGGCTGATTTTCGCTGGAAAGCAACTGGAAGACGGCAGGACTTTGGCCGACTATA 447060
Query 25177 ATATTCAAAAAGAATCCAC 25195
||||||||||||| || ||
Sbjct 447059 ATATTCAAAAAGAGTCGAC 447041
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAG-TGGAGTCGTC 25057
|||||||| || || || || | || || ||| ||||||| | || | |||| ||
Sbjct 354260 ATGCAAATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCTTGGAGGGTGGAAAGCTC 354319
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||| || ||||| |||| || |||| || ||||| || || ||||| |||||
Sbjct 354320 TGATACCATCGACAATGTGAARGCCAAGATCAA-GAAAAAGAGGGCATCCCACCAGACCA 354378
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | ||||| || || || ||| | ||| | | | ||| ||| ||| || ||
Sbjct 354379 GCAGAGGTTGATTTTCGCTGGAAAGCAACTGGAACACGGCAGGACTTTGGCCGACTATAA 354438
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||||||||| || || | ||||| || ||
Sbjct 354439 CATTCAAAAAGAGTCGACTTTGCATTTGGTACT 354471
>seq4
Length=5448771
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || || |||| || || |||| || |||| || ||| |||
Sbjct 205448 ATGCAGATCTTCGTGAAAACGCTGACAGGGAAGACCATAACTCTCGAGGTCGAGAGTTCT 205389
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || ||||| ||||| | || | ||| ||||| || || || || || |||||
Sbjct 205388 GATACCATCGATAATGTGAAGGCCAAGATTCAG-GACAAGGAGGGAATACCGCCGGACCA 205330
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | |||||||| || || || | || |||| ||| ||| | | ||| |||||
Sbjct 205329 GCAGCGTCTCATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGAACTCTTGCCGACTACAA 205270
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || ||||| ||||| ||||| | ||||||||||| | |||||
Sbjct 205269 CATCCAGAAAGAGTCCACCCTACACCTTGTGCTAAGGCTCCGTGGAGG 205222
>seq21
Length=2013095
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/206 (71%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| || || ||||| || || ||||||| | || |||||| ||
Sbjct 1809684 ATGCAAATCTTTGTGAAAACCTTGACTGGGAAGACCATCACTCTGGAGGTGGAGAGCTCC 1809743
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || || || || |||| |||| ||| ||||| || || ||||| || ||
Sbjct 1809744 GACACCATTGA--CAATGTGAAAGCCAAAATTCAG-GACAAGGAGGGTATTCCTCCGGAT 1809800
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| || || | ||||| || || || || | || |||| | ||| | | ||||||
Sbjct 1809801 CAGCAAAGGCTGATTTTCGCAGGGAAGCAGCTGGAGGATGGAAGGACTCTCGCTGATTAC 1809860
Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201
|||||||| || || ||||| || ||
Sbjct 1809861 AATATTCAGAAGGAGTCCACTCTTCA 1809886
>seq60
Length=1131370
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151
||||||||||| || ||||||||||| || || | |||||||| || || ||||| ||
Sbjct 437252 GACAAAGAAGGTATCCCACCTGACCAGCAAAGGTTAATTTTTGCTGGTAAGCAATTGGAT 437193
Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211
|||| ||| || | | ||||| || || ||||| || || || || || | || |
Sbjct 437192 GATGGTCGAACACTTGCAGATTATAACATCCAAAAGGAGTCAACCCTTCACCTGGTCTTG 437133
Query 25212 AGGCTAAGAGGAGG 25225
||||| || |||||
Sbjct 437132 AGGCTCAGGGGAGG 437119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433322444193380
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |