Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq6 199 4e-46 seq100 93.3 5e-14 seq17 93.3 5e-14 seq124 89.7 6e-13 seq93 89.7 6e-13 seq39 89.7 6e-13 seq69 86.0 7e-12 seq31 86.0 7e-12 seq9 86.0 7e-12 seq2 86.0 7e-12 seq40 84.2 2e-11 seq7 84.2 2e-11 seq88 82.4 9e-11 >seq6 Length=5093711 Score = 199 bits (220), Expect = 4e-46 Identities = 413/609 (68%), Gaps = 7/609 (1%) Strand=Plus/Minus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||| |||||||| || ||| || | ||||||||||| || ||||| || || Sbjct 4852243 GTACAGCAAGCACGCGAAATCGCAGTGCAGGCCTTCGTCTCGGGAGATCAATTCGTTTGA 4852184 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTAC 93200 |||||| || ||||| | || ||||||||||| ||||| ||||| | ||| ||||| | Sbjct 4852183 GAATGTCAATCCTGGCATAAGGCCTCGTTTCTTCAGCCAGAATATGGC-GCAGAAACTTC 4852125 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 | || || || ||||||||||| ||| || | | | ||| || ||||| ||| Sbjct 4852124 CCGAGAAGAAAATACCTTCCACACATGCGAAGCCAATCAGACGCTCTGCAAACGACTCGG 4852065 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 | | | ||||||||||| ||||| |||||||| ||| | ||||||| || | Sbjct 4852064 A---GCCGTCGATCCATTTTAGCGCCCACTCGGCTTTCTTCGCGACGCAAGGTACAGTCT 4852008 Query 93321 CGATAGCGT-TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 |||| |||| || | | ||| |||| | || || ||||| || |||| ||| Sbjct 4852007 CGATGGCGTGGAACAACCTGTTCT-TCTCGACTGAGTCCTTGATGTAGGTTTCGAGCAAC 4851949 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 | | ||||| || || || | ||||| ||||| |||||||| || ||||| |||| Sbjct 4851948 AAACTGTACATCTCGGAGTGAATGTTCTCAATTGCGATTTGGAAGCCATAGAACGCTCTA 4851889 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCA 93499 || |||| | ||| || || | || | | ||||||| || || |||||| Sbjct 4851888 GCCTCCGCAACCTGAACCTCCTTCATGAACCGGCCGGCGAGATTCTCCAGAACGATACCA 4851829 Query 93500 TCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC 93559 ||||| || || || || |||| | || || ||||| || || || | | || Sbjct 4851828 TCGGAGGCGGCGAAGAAGGCCAGAACGTGGGAGATGAAATGCTTTTCGTCGGCCGTGAGG 4851769 Query 93560 TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCT 93619 ||||||| | || || | ||| || ||||| || || | ||||| ||||| || Sbjct 4851768 CCTTCCCAATGGCGGAGGTCCTGTGAGAGGTCGACCTCCTCAGCGGTCCAGAACGAGGCC 4851709 Query 93620 TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGA 93679 ||||| |||||||| |||||||| | |||| | |||||| || ||| || | | Sbjct 4851708 ATGGCTTTCTTGTACATTTCCCATATCTGAGGATACTCAATTGGGAACATGCAGAATCTA 4851649 Query 93680 TTAGGGTTA 93688 | |||||| Sbjct 4851648 TCGGGGTTA 4851640 >seq100 Length=803973 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/102 (81%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCG 126323 ||| ||| |||||||||||||||||||||||||||||| | |||||| || | ||| Sbjct 186054 CAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGGAAGGGCG 185997 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 ||||||| || |||||| ||| ||| ||||| ||| | |||| Sbjct 185996 TGGGTTCAAATCCCACAGCTGTCAATTTATT-TTGTATTTTT 185956 >seq17 Length=2382667 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/107 (80%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||||| | | |||| Sbjct 1581420 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGC 1581361 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||| || ||||| ||||| | || ||||| |||||| || Sbjct 1581360 GTGGGTTCAAATCCCACTTCTGAC-ATTTTTTATTATTATTTTTTTT 1581315 >seq124 Length=632428 Score = 89.7 bits (98), Expect = 6e-13 Identities = 83/105 (79%), Gaps = 7/105 (7%) Strand=Plus/Minus Query 126255 TTCTATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC 126314 ||||| | ||| ||| ||||||||||||||||||||||||| | ||| |||| | || Sbjct 269435 TTCTAWCAAAAGTYAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGRT--CC 269378 Query 126315 TCGGGA----GCGTGGGTTCGAACCCCACACCTGACAAATTATTA 126355 ||| || |||||||||| || ||||| |||||||| ||||| Sbjct 269377 TCGTGAGAGGGCGTGGGTTCAAATCCCACTTCTGACAAA-TATTA 269334 >seq93 Length=868061 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/106 (80%), Gaps = 7/106 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 422222 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCRTGAGAGGGCG 422281 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||||||| || ||||| ||||| |||||||||| |||||||| Sbjct 422282 TGGGTTCAAATCCCACTTCTGAC-AATTATTATT----TTTTTGTT 422322 >seq39 Length=1364243 Score = 89.7 bits (98), Expect = 6e-13 Identities = 74/89 (83%), Gaps = 6/89 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 138588 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 138645 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||| || ||||| |||||||| Sbjct 138646 GCGTGGGTTCAAATCCCACTTCTGACAAA 138674 >seq69 Length=1087415 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/108 (79%), Gaps = 9/108 (8%) Strand=Plus/Plus Query 126249 TTGCGCTTCTATTT---ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGAT 126305 ||||| ||| ||| | ||||||| ||||||||||||||||||||||||| | ||| | Sbjct 397010 TTGCGTTTCGTTTTCAAAAAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTT 397069 Query 126306 CTGGTTCCCTCGGGA----GCGTGGGTTCGAACCCCACACCTGACAAA 126349 ||||| | ||| || |||||||||| || ||||| |||||||| Sbjct 397070 CTGGT--CTTCGTGAGAGGGCGTGGGTTCAAATCCCACTTCTGACAAA 397115 >seq31 Length=1547129 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| ||||| | |||| ||||| || Sbjct 729923 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTTTGGT--CCTCGTGAGATG 729980 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 729981 GCGTGGGTTCAAATCCCACTTCTGACA 730007 >seq9 Length=3736781 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/98 (81%), Gaps = 8/98 (8%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 140427 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAAGG 140370 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA--ATTATTATT 126357 ||||||||| || ||||| ||||||| ||| ||||| Sbjct 140369 CGTGGGTTCAAATCCCACTTCTGACAACTATTTTTATT 140332 >seq2 Length=6783546 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | ||||| Sbjct 3692964 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGCG 3693023 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 3693024 TGGGTTCAAATCCCACTTCTGACA 3693047 >seq40 Length=1372308 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/106 (78%), Gaps = 6/106 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 903351 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 903294 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||| || ||||| |||||| || ||| ||||||| Sbjct 903293 GCGTGGGTTCAAATCCCACTTCTGACAGTTTTTTAAAATAATTTTT 903248 >seq7 Length=5085854 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/108 (79%), Gaps = 7/108 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1029603 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1029546 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAAT---TTTTGTT 126369 |||||| || |||||| ||| || | | | ||||||| ||||||| Sbjct 1029545 GGGTTCAAATCCCACAGCTGTCACA--AGTTTTGGAATTAATTTTGTT 1029500 >seq88 Length=920027 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 260539 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 260482 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 260481 TTCAAATCCCACAGCTGTCAATTT 260458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556853477280480