Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_008520.2
Length=132239
Score E
Sequences producing significant alignments: (Bits) Value
seq124 91.5 1e-13
seq14 86.0 5e-12
>seq124
Length=632428
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245
|||||||||||| ||||||||| | || || || || || || |||| ||| |
Sbjct 447466 AATGCAAATTTTCGTCAAAACGCTCACGGGAAAGACTATCACATTGGAGGTTGAAAGCTC 447407
Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305
||| | ||| | | || ||| || ||| ||||| ||||| | || || ||
Sbjct 447406 CGACACAATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCA 447347
Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365
|||||||| |||| || ||||| || | |||||| ||| | |||||||| ||
Sbjct 447346 GCAAAGGCTAATTTTCGCAGGCAAGCAGCTTGAAGATGGACGGACTCTTGCCGATTACAA 447287
Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413
|| ||||| || || || || ||| ||||| | ||||| ||||||||
Sbjct 447286 CATTCAAAAGGAGTCAACTCTTCATCTAGTGCTCCGTCTTCGCGGTGG 447239
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246
||||| || ||||| ||||| | ||||||||||| |||||| | || |||
Sbjct 447921 ATGCAGATATTTGTGAAAACTCTCACCGGCAAAACAATTACCCTTGAGGTTGAAAGTTCT 447862
Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306
||| || ||| | | ||||| |||||| ||||| ||||| |||| || ||
Sbjct 447861 GATACTATTGACAATGTAAAGGCCAAAATTCAGGACAAGGAAGGAATTCCACCGGACCAG 447802
Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366
|| ||||| || | || || || || | ||||| ||| |||||||||| ||
Sbjct 447801 CAGAGGCTAATCTTCGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTGGCCGATTACAAC 447742
Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413
||||||||||| || || || || || ||| | ||| | ||||||||
Sbjct 447741 ATACAAAAAGAGTCCACGCTCCACTTGGTGCTCCGTTTACGCGGTGG 447695
>seq14
Length=2855554
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246
|||||||| || || ||||| | || |||||||| || ||| | || ||||
Sbjct 998432 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGTTCG 998491
Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306
||| | ||| | | ||||| ||| || || ||||| || |||| ||| ||
Sbjct 998492 GATACCATTGACAATGTAAAGGCAAAGATCCAAGATAAAGAGGGAATTCCTCCCGACCAG 998551
Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366
||||||||||| | || || || ||| | || ||| | ||| | |||||||| |||
Sbjct 998552 CAAAGGCTTATCTTCGCTGGTAAGCAACTCGAGGATGGTCGAACCCTTGCCGATTACAAT 998611
Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413
|| || || |||||||| || ||| | ||| | | || ||||||||
Sbjct 998612 ATCCAGAAGGAATCTACTCTTCATCTGGTGCTTAGACTTCGCGGTGG 998658
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 423034576098400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |