Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq14 136 3e-27 seq21 134 1e-26 seq124 125 6e-24 seq4 122 7e-23 >seq14 Length=2855554 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| |||||||| ||||| || || || || || ||||| | |||||||| | | | Sbjct 999343 GATGCAGATTTTTGTGAAAACCTTGACTGGCAAGACAATCACTTTGGAAGTGGAGAGCTC 999402 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||||| | || || | || ||| ||||||||||||||||| || ||||| || || Sbjct 999403 CGATACCATTGATAATGTGAAGGCAAAGATTCAAGACAAGGAGGGCATCCCACCAGACCA 999462 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | | || || || ||||| || | || ||| | | || | | |||||||| Sbjct 999463 ACAGAGGTTGATCTTCGCAGGCAAGCAACTCGAAGATGGCAGAACTTTAGCAGATTACAA 999522 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| ||||| ||||| || | ||||| || | ||||||||||| || Sbjct 999523 CATCCAAAAGGAATCAACTCTGCATTTGGTGCTTCGATTGCGCGGTGG 999570 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| |||||||| || || || || || || ||| ||||| | |||||||| | | | Sbjct 999115 GATGCAGATTTTTGTGAAGACCTTGACAGGCAAGACGATCACTTTGGAAGTGGAGAGCTC 999174 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 |||||| | ||| || | ||| || || |||||||||||||| || ||||| || || Sbjct 999175 TGATACCATTGACAATGTGAAAGCCAAGATCCAAGACAAGGAGGGCATCCCACCTGACCA 999234 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || ||||| || || || |||| ||| | || | | |||||||| Sbjct 999235 ACAGAGGCTGATCTTTGCTGGTAAGCAACTAGAAGATGGTAGGACTCTGGCAGATTACAA 999294 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| || || ||||| || | || || || | || ||||| || || Sbjct 999295 CATACAGAAGGAATCGACACTGCACTTGGTGCTTCGGTTGCGAGGCGG 999342 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| ||||| || || | || || ||||| |||| ||||| ||||||| | Sbjct 998659 GATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATCACGCTTGAGGTGGAAAGTTC 998718 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | ||| || | || ||||| ||||| ||||||||||| || || ||||| Sbjct 998719 TGATACGATTGACAATGTGAAGGCTAAAATCCAAGATAAGGAGGGTATCCCTCCTGATCA 998778 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || ||||| || || ||| | ||||| ||| || | | || ||||| Sbjct 998779 ACAGAGGCTGATTTTTGCTGGTAAGCAGCTTGAGGACGGCCGTACTCTTGCTGACTACAA 998838 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGT 22427 || || |||||||| || | ||||| || Sbjct 998839 TATCCAGAAAGAATCTACTTTGCATTTGGT 998868 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || || ||| |||| | || || |||| | | Sbjct 999571 GATGCAGATCTTTGTGAAGACACTGACAGGGAAGACGATCACGTTGGAGGTCGAAAGCTC 999630 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | ||| | | || ||| ||||||||||||||||| ||||| || ||||| Sbjct 999631 GGACACAATCGACAACGTGAAGGCAAAGATTCAAGACAAGGAGGGGATTCCTCCAGATCA 999690 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | | || ||||| || ||||| | |||||| || || | | |||||||| Sbjct 999691 ACAGAGATTGATCTTTGCTGGGAAACAACTGGAGGATGGGCGAACTTTGGCGGATTACAA 999750 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||| ||||| || ||| | || | || | || ||||||| || Sbjct 999751 CATTCAGAAAGAGTCGACCCTCCACCTCGTCCTCCGCCTGCGCGGTGG 999798 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||||||||| || || || ||||| |||| | || || || | | | Sbjct 998888 ATGCAGATTTTTGTTAAAACCTTGACTGGCAAAACAATCACCTTGGAGGTCGAGAGCTCT 998947 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || || ||||| |||||||| |||||||| || ||| Sbjct 998948 GATACAATCGATAATGTGAAAGCCAAGATCCAAGATAAGGAGGGCATTCCACCTGACCAA 999007 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || || | || || | || | | ||||| ||| Sbjct 999008 CAGAGGTTGATCTTTGCTGGTAAGCAACTCGAAGACGGTAGGACTCTGGCAGATTATAAC 999067 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||| || | || | || | |||||||| || || Sbjct 999068 ATCCAGAAGGAATCGACACTGCACCTGGTGCTCCGATTGCGTGGTGG 999114 >seq21 Length=2013095 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| ||||| ||||| || || || || || ||||||| || ||||| | | | Sbjct 1809683 GATGCAAATCTTTGTGAAAACCTTGACTGGGAAGACCATCACTCTGGAGGTGGAGAGCTC 1809742 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | ||| || | ||| |||||||| ||||||||||||||||| || ||||| Sbjct 1809743 CGACACCATTGACAATGTGAAAGCCAAAATTCAGGACAAGGAGGGTATTCCTCCGGATCA 1809802 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || || || || || ||| | |||||| | || || | |||||||| Sbjct 1809803 GCAAAGGCTGATTTTCGCAGGGAAGCAGCTGGAGGATGGAAGGACTCTCGCTGATTACAA 1809862 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||||| || || ||||| | || | || |||| | || || |||||| Sbjct 1809863 TATTCAGAAGGAGTCCACTCTTCACCTTGTCCTGCGTCTCCGTGGTGGTTTT 1809914 >seq124 Length=632428 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| |||||| | ||||| ||||| | || ||||| || |||| Sbjct 447923 AGATGCAGATATTTGTGAAAACTCTCACCGGCAAAACAATTACCCTTGAGGTTGAAAGTT 447864 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | ||||| | ||| || | || |||||||| |||||||| || |||||||| || | Sbjct 447863 CTGATACTATTGACAATGTAAAGGCCAAAATTCAGGACAAGGAAGGAATTCCACCGGACC 447804 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | || || || || || || ||| | || || ||| ||| | ||||||||| Sbjct 447803 AGCAGAGGCTAATCTTCGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTGGCCGATTACA 447744 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||| |||||||| ||||| | || || || | || || ||||| || Sbjct 447743 ACATACAAAAAGAGTCCACGCTCCACTTGGTGCTCCGTTTACGCGGTGG 447695 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || || || || |||| | || || |||| | || Sbjct 447465 ATGCAAATTTTCGTCAAAACGCTCACGGGAAAGACTATCACATTGGAGGTTGAAAGCTCC 447406 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || ||||| || |||||||||||||| ||||| || || || || Sbjct 447405 GACACAATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 447346 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || || ||||| ||| | || ||| || || | ||||||||||| Sbjct 447345 CAAAGGCTAATTTTCGCAGGCAAGCAGCTTGAAGATGGACGGACTCTTGCCGATTACAAC 447286 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || || || | ||| |||| | || | ||||| || Sbjct 447285 ATTCAAAAGGAGTCAACTCTTCATCTAGTGCTCCGTCTTCGCGGTGG 447239 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| || || ||||| | || || ||||| |||| | || ||||||| | | Sbjct 447694 GATGCAAATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCTTGGAGGTGGAAAGCTC 447635 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 |||||| | ||| || | || || || ||||| || |||||||||||||| || || Sbjct 447634 TGATACCATCGACAATGTGAAGGCCAAGATCCAAGATAAAGAGGGTATTCCACCGGACCA 447575 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || || || || ||||| | || ||| |||||| | | || ||||| Sbjct 447574 GCAGAGGCTGATTTTCGCGGGTAAACAACTCGAAGATGGCCGCACTCTGGCTGACTACAA 447515 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| || ||||| || | ||||| || Sbjct 447514 TATTCAGAAGGAATCAACATTGCATTTGGT 447485 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || ||||| || ||||| ||||||| || || || | | Sbjct 447237 ATGCAGATTTTTGTGAAGACCTTAACGGGAAAAACAATCACTCTGGAGGTTGAGAGTTCG 447178 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | || ||||||||||| || ||||| || ||||| || || Sbjct 447177 GATACCATCGACAACGTGAAGGCTAAAATTCAAGATAAAGAGGGCATCCCACCAGACCAG 447118 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || || || || | || || | | || | |||| || || Sbjct 447117 CAGAGGCTGATTTTCGCTGGAAAGCAACTGGAAGACGGCAGGACTTTGGCCGACTATAAT 447058 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||||||||| || || Sbjct 447057 ATTCAAAAAGAGTCGAC 447041 >seq4 Length=5448771 Score = 122 bits (134), Expect = 7e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| ||||| || || || || || | ||||| || || || | | Sbjct 199776 AATATGCAGATCTTTGTGAAAACGTTGACGGGGAAGACCATAACTCTCGAGGTTGAGAGC 199717 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||||||| | ||| || | || ||| ||||| ||||||||||| || || || || Sbjct 199716 TCCGATACCATCGACAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATACCGCCGGAC 199657 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || ||||| || || ||| | ||||| ||| ||| | |||||||| Sbjct 199656 CAGCAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGAACCCTAGCCGATTAC 199597 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || || || ||||| Sbjct 199596 AACATCCAGAAGGAGTCCAC 199577 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || || || || | ||||| || || || | | Sbjct 205448 ATGCAGATCTTCGTGAAAACGCTGACAGGGAAGACCATAACTCTCGAGGTCGAGAGTTCT 205389 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || ||||| ||||||||||| || || || || || Sbjct 205388 GATACCATCGATAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATACCGCCGGACCAG 205329 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || || ||| | |||||| || || | |||| |||||| Sbjct 205328 CAGCGTCTCATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGAACTCTTGCCGACTACAAC 205269 Query 22399 ATTCAAAAAGAATCCACCATACA 22421 || || ||||| |||||| |||| Sbjct 205268 ATCCAGAAAGAGTCCACCCTACA 205246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419722618562380