Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq14 107 1e-18 seq124 96.9 2e-15 seq15 82.4 5e-11 >seq14 Length=2855554 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | ||||| | || |||||||| || ||| | || |||| | Sbjct 998432 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGTTCG 998491 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||| || ||||||||||| | ||| |||| Sbjct 998492 GATACCATTGACAATGTAAAGGCAAAGATCCAAGATAAAGAGGGAATTCCTCCCGACCAG 998551 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || |||||||| ||||| || ||||| || ||| ||| | |||||||||||| Sbjct 998552 CAAAGGCTTATCTTCGCTGGTAAGCAACTCGAGGATGGTCGAACCCTTGCCGATTACAAT 998611 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||||||||||||||||||||| |||| Sbjct 998612 ATCCAGAAGGAATCTACTCTTCATCTGGT 998640 Score = 95.1 bits (104), Expect = 9e-15 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||||||||| || ||||||||||| || |||||||||||| | ||| |||| |||| Sbjct 999231 ACCAACAGAGGCTGATCTTTGCTGGTAAGCAACTAGAAGATGGTAGGACTCTGGCAGATT 999290 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||| || ||||||||||| || || || |||| | || || ||||| || Sbjct 999291 ACAACATACAGAAGGAATCGACACTGCACTTGGTGCTTCGGTTGCGAGGCGG 999342 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | || || | || ||||||||||| || | || |||| | Sbjct 998660 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATCACGCTTGAGGTGGAAAGTTCT 998719 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | ||| ||||| ||||| |||||| | ||| | ||| Sbjct 998720 GATACGATTGACAATGTGAAGGCTAAAATCCAAGATAAGGAGGGTATCCCTCCTGATCAA 998779 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || || |||||||| || || || || || ||| | || || |||||| Sbjct 998780 CAGAGGCTGATTTTTGCTGGTAAGCAGCTTGAGGACGGCCGTACTCTTGCTGACTACAAT 998839 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||||| ||||||||| | ||| |||| Sbjct 998840 ATCCAGAAAGAATCTACTTTGCATTTGGT 998868 >seq124 Length=632428 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | ||||| | || || |||||||| ||| |||| |||| | | Sbjct 447693 ATGCAAATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCTTGGAGGTGGAAAGCTCT 447634 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || || |||||||||||| | || |||| Sbjct 447633 GATACCATCGACAATGTGAAGGCCAAGATCCAAGATAAAGAGGGTATTCCACCGGACCAG 447574 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || || || || || |||||||| |||||| ||| |||| || |||||| Sbjct 447573 CAGAGGCTGATTTTCGCGGGTAAACAACTCGAAGATGGCCGCACTCTGGCTGACTACAAT 447514 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||||||||| || | ||| |||| | ||| | || || ||| Sbjct 447513 ATTCAGAAGGAATCAACATTGCATTTGGTGCTTCGTCTTCGTGGGGGA 447466 >seq15 Length=2492501 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || || | || || | || || || ||||| ||| |||| ||| | | Sbjct 255839 AATGCAGATCTTCGTGAAGACCCTTACCGGGAAGACCATCACCTTGGAGGTGGAGAGCTC 255780 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | | | | ||| || ||| || || ||||| | ||| | |||| Sbjct 255779 AGATACGATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGAATTCCTCCAGACCA 255720 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| | ||||||||||| || || || || ||| | ||| |||| |||||||| Sbjct 255719 GCAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAGGATGGGAGGACTCTGGCTGATTACAA 255660 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| || |||||||| | || | ||| | ||||| || Sbjct 255659 CATCCAGAAGGAGTCCACTCTTCACCTTGTCCTTCGTCTCCGAGGTGG 255612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358120208392408