Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq124 116 3e-21 seq14 111 1e-19 seq4 100 2e-16 >seq124 Length=632428 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || || || | ||| || |||||||| |||||||||||| || || || ||||| Sbjct 447713 ACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCCAGGGTTCGGCCGTCTTCG 447772 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || |||||| |||| || | ||| |||||||| ||||| ||||| ||||| | Sbjct 447773 AGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTGA 447832 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 || || |||| | |||| || || | ||| || || | ||| | |||||| Sbjct 447833 ATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACCTCAAGGGTAATTGTTTTG 447892 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| |||||||| ||||| |||||||| Sbjct 447893 CCGGTGAGAGTTTTCACAAATATCTGCAT 447921 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 |||| ||| | || || || |||||||||||||||||| | ||| || ||||||| Sbjct 447257 ACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGTCCATCTTCA 447316 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || || ||| | || || | || ||||| ||||| || ||||| ||||| | Sbjct 447317 AGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGA 447376 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| ||| | | |||| ||||||| | ||| || |||| || | || || Sbjct 447377 ATCTTAGCTTTGACATTGTCAATTGTGTCGGAGCTTTCAACCTCCAATGTGATAGTCTTT 447436 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || ||||| || ||||| ||||| Sbjct 447437 CCCGTGAGCGTTTTGACGAAAATTTGCAT 447465 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || ||||| | || ||||| || ||||| ||||| || Sbjct 447464 ATTCCCCCACGAAGACGAAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCA 447523 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || |||||| ||||||||||| ||| | || || | ||| |||||||| Sbjct 447524 GCCAGAGTGCGGCCATCTTCGAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGT 447583 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || ||||| || ||||| || | | || | ||| || | | ||| Sbjct 447584 GGAATACCCTCTTTATCTTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGCTTTCC 447643 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || || || ||||| || || || ||||| Sbjct 447644 ACCTCCAAGGTGATGGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693 >seq14 Length=2855554 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTC 114232 || ||||| | || ||||| ||||| ||||||||||| ||| | ||| | |||||| Sbjct 999552 ACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCTAA-AGTTCTGCCATCTTC 999494 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||||| || || ||| |||| | | ||||||||| || || ||||| || ||||| Sbjct 999493 GAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCTTG 999434 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||||| || | | |||| ||| |||| | || || |||| || | || || Sbjct 999433 AATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCCACTTCCAAAGTGATTGTCTT 999374 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| |||| ||||| |||||||||||||| Sbjct 999373 GCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || ||||||||||| || ||| | | |||||| ||||| |||||| Sbjct 999312 GTCGATTCCTTCTGTATGTTGTAATCTGCCAGAGTCCTACCATCTTCTAGTTGCTTACCA 999253 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||||||||| || || ||||| || ||||| ||||| ||| Sbjct 999252 GCAAAGATCAGCCTCTGTTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCTTTC 999193 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || | | || || |||| || | ||| ||||| |||| || Sbjct 999192 ACATTGTCAATGGTATCAGAGCTCTCCACTTCCAAAGTGATCGTCTTGCCTGTCAAGGTC 999133 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 999132 TTCACAAAAATCTGCAT 999116 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| |||||||||||||| || ||| || ||| || |||||||| ||| Sbjct 999768 GTCGACTCTTTCTGAATGTTGTAATCCGCCAAAGTTCGCCCATCCTCCAGTTGTTTCCCA 999709 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | |||||| || |||||||| || || ||||| ||||||| || Sbjct 999708 GCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCTTGAATCTTTGCCTTC 999649 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | | |||||| |||| || | ||| || || ||||| || Sbjct 999648 ACGTTGTCGATTGTGTCCGAGCTTTCGACCTCCAACGTGATCGTCTTCCCTGTCAGTGTC 999589 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 999588 TTCACAAAGATCTGCAT 999572 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || ||||| ||||| || ||| | | ||||| ||||| |||||| Sbjct 999084 GTCGATTCCTTCTGGATGTTATAATCTGCCAGAGTCCTACCGTCTTCGAGTTGCTTACCA 999025 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||||||||| || |||||||| || || || ||||| ||| Sbjct 999024 GCAAAGATCAACCTCTGTTGGTCAGGTGGAATGCCCTCCTTATCTTGGATCTTGGCTTTC 998965 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | || || | | ||||| |||| ||| | |||||||| |||| ||| Sbjct 998964 ACATTATCGATTGTATCAGAGCTCTCGACCTCCAAGGTGATTGTTTTGCCAGTCAAGGTT 998905 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 998904 TTAACAAAAATCTGCAT 998888 >seq4 Length=5448771 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || || || || | || | ||| || || || || |||||||||||| Sbjct 199546 ACCACCACGGAGCCTTAACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGC 199605 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || || ||||| || |||||||| ||||||||||||| |||||||| || Sbjct 199606 TAGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGG 199665 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || || || ||||| ||||||| || | | || | ||| |||| | || || Sbjct 199666 TATTCCCTCCTTGTCCTGAATCTTTGCCTTCACATTGTCGATGGTATCGGAGCTCTCAAC 199725 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || |||| ||||| ||||| |||||||| Sbjct 199726 CTCGAGAGTTATGGTCTTCCCCGTCAACGTTTTCACAAAGATCTGCAT 199773 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || || | || | |||| || || ||||| || |||||||| ||| Sbjct 205221 ACCTCCACGGAGCCTTAGCACAAGGTGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGC 205280 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| ||| ||| || || || |||||||| | ||||||||||| |||||||| || Sbjct 205281 AAGAGTTCGACCATCCTCCAGCTGCTTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGG 205340 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || || || ||||| |||||| || | | || | ||| || | ||||| Sbjct 205341 TATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCGATGGTATCAGAACTCTCGAC 205400 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || ||||| ||||| || || |||||||| Sbjct 205401 CTCGAGAGTTATGGTCTTCCCTGTCAGCGTTTTCACGAAGATCTGCAT 205448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420129013351824