Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6 203 6e-47 >seq6 Length=5093711 Score = 203 bits (224), Expect = 6e-47 Identities = 564/847 (67%), Gaps = 26/847 (3%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 ||||||||||| || | ||| ||||||||| |||||| | ||||| | ||||| Sbjct 4851692 ATGTACAAGAAAGCCATGGCCTCGTTCTGGACCGCTGAGGAGGTCGACCTCTCACAGGAC 4851751 Query 42369 A-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGC 42427 | ||| || || | || | | |||||||| |||| || || | ||||| Sbjct 4851752 CTCCGCCATTGGGAAGGC-CTCACGGCCGACGAAAAGCATTTCATCTCCCACGTTCTGGC 4851810 Query 42428 CTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGA 42487 ||||||||||||||| || || || || ||||| || ||| | |||||||||| || Sbjct 4851811 CTTCTTCGCCGCCTCCGATGGTATCGTTCTGGAGAATCTCGCCGGCCGGTTCATGAAGGA 4851870 Query 42488 GGTGCAGTACTTTGAGGCGCGCT---GC-TTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 ||| ||| ||| || | ||| || ||||| |||||||| || || || |||||| Sbjct 4851871 GGTTCAG---GTTGCGGAG-GCTAGAGCGTTCTATGGCTTCCAAATCGCAATTGAGAACA 4851926 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 | ||||| ||| ||||| ||||| | || |||||| ||| | |||||| | Sbjct 4851927 TTCACTCCGAGATGTACAGTTTGTTGCTCGAAACCTACATCAAGGACTCAGTCGAGAAGA 4851986 Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGC 42663 || || ||||| | ||||| ||||| | || ||| || |||||| || || ||||||| Sbjct 4851987 ACAGGTTGTTCCACGCCATCGAGACTGTACCTTGCGTCGCGAAGAAAGCCGAGTGGGCGC 4852046 Query 42664 TCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 | || |||||||| | |||| |||| | ||| | ||| | | ||| | | Sbjct 4852047 TAAAATGGATCGACGGCTCCGA---GTCGTTTGCAGAGCGTCTGATTGGCTTCGCATGTG 4852103 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAAGGTG 42782 | || || || ||||||||||| ||| | |||| |||||||| ||| | ||| Sbjct 4852104 TGGAAGGTATTTTCTTCTCGGGAAGTTTCTGCGCCATATTCTGGCTGAAGAAACGAGGCC 4852163 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 | ||||| ||| | || ||||| |||||| | ||| | | ||||| || ||||| | Sbjct 4852164 T-TATGCCAGGATTGACATTCTCAAACGAATTGATCTCCCGAGACGAAGGCCTGCACTGC 4852222 Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA-CAAGCCCTCGAAGGAGCGGGT 42901 || || || ||| | |||| ||| | | ||| | ||| || | || || Sbjct 4852223 GATTTCGCGTGCTTGCTGTACTC---TCTGATGAGGAATCAACTGAGCG-ACGACAAAGT 4852278 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 || ||| || | |||| ||||| ||||||| ||| ||| | | | ||| | Sbjct 4852279 GAAGGGGATCGTCCGGCAGGCGGTGGATATCGAGAGGGAATTCGTGTGCGATGCACTG-C 4852337 Query 42962 CGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 |||| | |||| || |||||| ||| || ||| || |||||||| ||| ||| || | Sbjct 4852338 CGTGCGCGTTGGTGGGGATGAACGGCGATCTGATGAGCGAGTACATCGAGTTCGTTGCTG 4852397 Query 43021 ACCATCTCCTG--TGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGA 43078 ||| | ||| ||| | || | |||| | ||||| | | ||| ||||| Sbjct 4852398 ACCGGTTGCTGGTAGCC--CTAGGGCACAGCAAGATTTACAATGTACAGAACCCGTTCGA 4852455 Query 43079 CTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGA 43138 | ||||| || ||| || |||| || |||||||| ||||||||| | || | || Sbjct 4852456 TTGGATGGAATTGATATCGCTGCAGGGGAAAACCAACTTCTTCGAGAAGAGGGTGGGAGA 4852515 Query 43139 CTACCAG 43145 || ||| Sbjct 4852516 GTATCAG 4852522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944326781939520