Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq124 114 3e-20
seq21 113 1e-19
seq15 109 1e-18
seq14 105 2e-17
seq59 91.5 3e-13
seq17 89.7 1e-12
seq11 87.8 4e-12
>seq124
Length=632428
Score = 114 bits (126), Expect = 3e-20
Identities = 143/195 (73%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|||||||| |||||||||||||| | || | |||||||| | ||| ||||| |||||
Sbjct 447047 TCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGTCTTCCAGTTGCTTTCCAGCGAAA 447106
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||| | ||| || |||||| || |||||||| || ||||| || ||||||||
Sbjct 447107 ATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCTTGAATTTTAGCCTTCACGTTG 447166
Query 288403 TCTATAGAATCGCTCGA---TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || | ||| ||| || || || || ||||| || || || || | |||||
Sbjct 447167 TCGATGGTATC---CGAACTCTCAACCTCCAGAGTGATTGTTTTTCCCGTTAAGGTCTTC 447223
Query 288460 ACGAATATCTGCATT 288474
|| || |||||||||
Sbjct 447224 ACAAAAATCTGCATT 447238
Score = 113 bits (124), Expect = 1e-19
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| | | || || | || | |||| |||||||| || || || |||||
Sbjct 447695 CCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCC 447754
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || |||||||| | || ||||| |||||||| || | ||| || |||
Sbjct 447755 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGA 447814
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| || ||||| ||||| || || || || || |||| ||| ||| ||
Sbjct 447815 ATTCCTTCCTTGTCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACC 447874
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || || || ||||| ||||| || || |||||||||||
Sbjct 447875 TCAAGGGTAATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921
>seq21
Length=2013095
Score = 113 bits (124), Expect = 1e-19
Identities = 142/194 (73%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| ||||||||||| || || | ||||| || | || ||||| ||||||
Sbjct 1809646 TCCTTCTGGATGTTATAGTCGGCCAGAGTCCTACCGTCCTCCAGCTGCTTTCCGGCGAAG 1809587
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||| | ||| || ||||||||| ||||| || ||||| || || || || ||
Sbjct 1809586 ATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGGATCTTAGCCTTTACATTG 1809527
Query 288403 TCTATAGAATCGCTCGA---TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
||||| | || ||| || || || || || || || |||||||||| ||||||
Sbjct 1809526 TCTATGGTGTC---CGAACTCTCAACCTCCAGGGTAATGGTTTTCCCGGTCAACGTCTTG 1809470
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 1809469 ACGAAAATCTGCAT 1809456
>seq15
Length=2492501
Score = 109 bits (120), Expect = 1e-18
Identities = 166/234 (71%), Gaps = 12/234 (5%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | ||| || || |||| ||| || || ||||| || || || ||
Sbjct 255612 CCACCTCGGAGACGAAGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCC 255671
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || | || || || | || ||||| || ||||||| | ||| || |||||
Sbjct 255672 AGAGTCCTCCCATCCTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGG---TCTGGA 255728
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420
||||| || || ||||| || ||||| |||||||| || || | ||| ||||
Sbjct 255729 GGAATTCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCAATCGTATCTGAGCTC--- 255785
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| || || | ||||| ||||||||||| || ||||| ||||| |||||||||
Sbjct 255786 TCCACCTCCAAGGTGATGGTCTTCCCGGTAAGGGTCTTCACGAAGATCTGCATT 255839
>seq14
Length=2855554
Score = 105 bits (116), Expect = 2e-17
Identities = 141/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || || || || || || || || || | || ||||||| ||| || || || ||
Sbjct 999307 TTCCTTCTGTATGTTGTAATCTGCCAGAGTCCTACCATCTTCTAGTTGCTTACCAGCAAA 999248
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|||||| | |||||| | |||||| || || || || ||||| || |||||||| ||
Sbjct 999247 GATCAGCCTCTGTTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATT 999188
Query 288402 TTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|| || | ||| |||| || ||||| | ||||||||||| || |||| |||||
Sbjct 999187 GTCAATGGTATCAGAGCTC---TCCACTTCCAAAGTGATCGTCTTGCCTGTCAAGGTCTT 999131
Query 288459 GACGAATATCTGCAT 288473
|| || ||||||||
Sbjct 999130 CACAAAAATCTGCAT 999116
Score = 98.7 bits (108), Expect = 2e-15
Identities = 163/233 (70%), Gaps = 12/233 (5%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| || | || ||||| || | || ||||| || || || || || ||
Sbjct 999798 CCACCGCGCAGGCGGAGGACGAGGTGGAGGGTCGACTCTTTCTGAATGTTGTAATCCGCC 999739
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || || || || || | |||||| || || ||||||| | ||||||| |||||
Sbjct 999738 AAAGTTCGCCCATCCTCCAGTTGTTTCCCAGCAAAGATCAATCTCTGTTGA---TCTGGA 999682
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA---T 288420
|| || || || || || || || || |||||||| || || | || ||| |
Sbjct 999681 GGAATCCCCTCCTTGTCTTGAATCTTTGCCTTCACGTTGTCGATTGTGTC---CGAGCTT 999625
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || | ||||||||||||||| ||||| ||||| || || ||||||||
Sbjct 999624 TCGACCTCCAACGTGATCGTCTTCCCTGTCAGTGTCTTCACAAAGATCTGCAT 999572
Score = 96.9 bits (106), Expect = 8e-15
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| | || ||| || | ||| | || ||| |||||||| || || || ||
Sbjct 999570 CCACCGCGCAATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 999511
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || | || ||||| | ||| || ||||||||||||| | |||||| ||||
Sbjct 999510 AAAGTTCTGCCATCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGG 999451
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423
|| || || || || || || || || ||||| || || || | ||| |||| ||
Sbjct 999450 ATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTC---TCC 999394
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | ||||| ||||| || |||| || || || || ||||||||
Sbjct 999393 ACTTCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344
>seq59
Length=1141830
Score = 91.5 bits (100), Expect = 3e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429
||||| || ||||||||||| ||||| || || || || | ||||| || || |||||
Sbjct 573215 CCTTCCTTGTCCTGGATTTTAGCTTTGACATTGTCGATGGTGTCGCTGGACTCAACTTCC 573156
Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTT 288479
| ||| ||||||||||| || || || || ||||| |||||||| ||||
Sbjct 573155 AACGTAATCGTCTTCCCAGTAAGGGTTTTCACGAAGATCTGCATCTTGTT 573106
>seq17
Length=2382667
Score = 89.7 bits (98), Expect = 1e-12
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429
||||| || ||||||||||| ||||| || || || || | ||||| || || |||||
Sbjct 2194313 CCTTCCTTGTCCTGGATTTTAGCTTTGACATTGTCGATGGTGTCGCTGGACTCAACTTCC 2194254
Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| ||| ||||||||||| || || || || ||||| ||||||||
Sbjct 2194253 AACGTAATCGTCTTCCCAGTAAGGGTTTTCACGAAGATCTGCAT 2194210
>seq11
Length=3405507
Score = 87.8 bits (96), Expect = 4e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||||||||| || || ||||| || || || | ||||| || || |||
Sbjct 147034 ATACCCTCCTTATCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGCTGGACTCAACT 147093
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| ||||| || |||||||| || || || || ||||| |||||||||
Sbjct 147094 TCCAGCGTAATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATT 147141
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179638499733256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |