Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq124 114 3e-20 seq21 113 1e-19 seq15 109 1e-18 seq14 105 2e-17 seq59 91.5 3e-13 seq17 89.7 1e-12 seq11 87.8 4e-12 >seq124 Length=632428 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| |||||||||||||| | || | |||||||| | ||| ||||| ||||| Sbjct 447047 TCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGTCTTCCAGTTGCTTTCCAGCGAAA 447106 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || |||||| || |||||||| || ||||| || |||||||| Sbjct 447107 ATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCTTGAATTTTAGCCTTCACGTTG 447166 Query 288403 TCTATAGAATCGCTCGA---TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| ||| || || || || ||||| || || || || | ||||| Sbjct 447167 TCGATGGTATC---CGAACTCTCAACCTCCAGAGTGATTGTTTTTCCCGTTAAGGTCTTC 447223 Query 288460 ACGAATATCTGCATT 288474 || || ||||||||| Sbjct 447224 ACAAAAATCTGCATT 447238 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| | | || || | || | |||| |||||||| || || || ||||| Sbjct 447695 CCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCC 447754 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | || ||||| |||||||| || | ||| || ||| Sbjct 447755 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGA 447814 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || ||||| ||||| || || || || || |||| ||| ||| || Sbjct 447815 ATTCCTTCCTTGTCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACC 447874 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || ||||| ||||| || || ||||||||||| Sbjct 447875 TCAAGGGTAATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921 >seq21 Length=2013095 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| ||||||||||| || || | ||||| || | || ||||| |||||| Sbjct 1809646 TCCTTCTGGATGTTATAGTCGGCCAGAGTCCTACCGTCCTCCAGCTGCTTTCCGGCGAAG 1809587 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || ||||||||| ||||| || ||||| || || || || || Sbjct 1809586 ATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGGATCTTAGCCTTTACATTG 1809527 Query 288403 TCTATAGAATCGCTCGA---TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| | || ||| || || || || || || || |||||||||| |||||| Sbjct 1809526 TCTATGGTGTC---CGAACTCTCAACCTCCAGGGTAATGGTTTTCCCGGTCAACGTCTTG 1809470 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 1809469 ACGAAAATCTGCAT 1809456 >seq15 Length=2492501 Score = 109 bits (120), Expect = 1e-18 Identities = 166/234 (71%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || |||| ||| || || ||||| || || || || Sbjct 255612 CCACCTCGGAGACGAAGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCC 255671 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || || | || ||||| || ||||||| | ||| || ||||| Sbjct 255672 AGAGTCCTCCCATCCTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGG---TCTGGA 255728 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||||| || || ||||| || ||||| |||||||| || || | ||| |||| Sbjct 255729 GGAATTCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCAATCGTATCTGAGCTC--- 255785 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || | ||||| ||||||||||| || ||||| ||||| ||||||||| Sbjct 255786 TCCACCTCCAAGGTGATGGTCTTCCCGGTAAGGGTCTTCACGAAGATCTGCATT 255839 >seq14 Length=2855554 Score = 105 bits (116), Expect = 2e-17 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || || || || || || | || ||||||| ||| || || || || Sbjct 999307 TTCCTTCTGTATGTTGTAATCTGCCAGAGTCCTACCATCTTCTAGTTGCTTACCAGCAAA 999248 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| | |||||| | |||||| || || || || ||||| || |||||||| || Sbjct 999247 GATCAGCCTCTGTTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATT 999188 Query 288402 TTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || | ||| |||| || ||||| | ||||||||||| || |||| ||||| Sbjct 999187 GTCAATGGTATCAGAGCTC---TCCACTTCCAAAGTGATCGTCTTGCCTGTCAAGGTCTT 999131 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 999130 CACAAAAATCTGCAT 999116 Score = 98.7 bits (108), Expect = 2e-15 Identities = 163/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || ||||| || | || ||||| || || || || || || Sbjct 999798 CCACCGCGCAGGCGGAGGACGAGGTGGAGGGTCGACTCTTTCTGAATGTTGTAATCCGCC 999739 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || || || | |||||| || || ||||||| | ||||||| ||||| Sbjct 999738 AAAGTTCGCCCATCCTCCAGTTGTTTCCCAGCAAAGATCAATCTCTGTTGA---TCTGGA 999682 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA---T 288420 || || || || || || || || || |||||||| || || | || ||| | Sbjct 999681 GGAATCCCCTCCTTGTCTTGAATCTTTGCCTTCACGTTGTCGATTGTGTC---CGAGCTT 999625 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||||||||||||| ||||| ||||| || || |||||||| Sbjct 999624 TCGACCTCCAACGTGATCGTCTTCCCTGTCAGTGTCTTCACAAAGATCTGCAT 999572 Score = 96.9 bits (106), Expect = 8e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| | || ||| || | ||| | || ||| |||||||| || || || || Sbjct 999570 CCACCGCGCAATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 999511 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | || ||||| | ||| || ||||||||||||| | |||||| |||| Sbjct 999510 AAAGTTCTGCCATCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGG 999451 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || || || || || || || || ||||| || || || | ||| |||| || Sbjct 999450 ATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTC---TCC 999394 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || |||| || || || || |||||||| Sbjct 999393 ACTTCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344 >seq59 Length=1141830 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || ||||||||||| ||||| || || || || | ||||| || || ||||| Sbjct 573215 CCTTCCTTGTCCTGGATTTTAGCTTTGACATTGTCGATGGTGTCGCTGGACTCAACTTCC 573156 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTT 288479 | ||| ||||||||||| || || || || ||||| |||||||| |||| Sbjct 573155 AACGTAATCGTCTTCCCAGTAAGGGTTTTCACGAAGATCTGCATCTTGTT 573106 >seq17 Length=2382667 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || ||||||||||| ||||| || || || || | ||||| || || ||||| Sbjct 2194313 CCTTCCTTGTCCTGGATTTTAGCTTTGACATTGTCGATGGTGTCGCTGGACTCAACTTCC 2194254 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| ||||||||||| || || || || ||||| |||||||| Sbjct 2194253 AACGTAATCGTCTTCCCAGTAAGGGTTTTCACGAAGATCTGCAT 2194210 >seq11 Length=3405507 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| || || ||||| || || || | ||||| || || ||| Sbjct 147034 ATACCCTCCTTATCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGCTGGACTCAACT 147093 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| || |||||||| || || || || ||||| ||||||||| Sbjct 147094 TCCAGCGTAATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATT 147141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179638499733256