Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6 122 1e-22 seq1 111 2e-19 seq49 84.2 3e-11 >seq6 Length=5093711 Score = 122 bits (134), Expect = 1e-22 Identities = 162/225 (72%), Gaps = 9/225 (4%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || || ||||| |||||||| | ||| || ||||| || ||||||||| || || Sbjct 4852219 GTGCAGGCCTTCGTCTCGGGAGATCAATTCGTTTGAGAATGTCAATCCTGGCATAAGGCC 4852160 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 || ||||||| |||||| || || || || ||||||||||| || || |||||||| Sbjct 4852159 TCGTTTCTTCAGCCAGAATATGGCGCAGAAACTTCCCGAGAAGAAAATACCTTCCACACA 4852100 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG---TGTCAAACCACTTCAT 126234 ||||| ||| |||||||| ||||| ||||| | ||| | ||| || | Sbjct 4852099 TGCGAAGCCAATCAGACGCTCTGCAAA------CGACTCGGAGCCGTCGATCCATTTTAG 4852046 Query 126235 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 |||||||| || || ||| ||| || || || |||| ||| || Sbjct 4852045 CGCCCACTCGGCTTTCTTCGCGACGCAAGGTACAGTCTCGATGGC 4852001 >seq1 Length=7185522 Score = 111 bits (122), Expect = 2e-19 Identities = 257/382 (67%), Gaps = 8/382 (2%) Strand=Plus/Minus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTC---GC 10932 |||||||||||||||||||||||| |||||||| ||||| || | || |||||| | Sbjct 6703821 AAAGCCATCCATCTCAGTCAAGAGCTGATTGATCGTTTGCTCTCTCTCGTCATTCCCACC 6703762 Query 10933 GGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 10992 | |||| || | || || ||| || || || ||||| ||||| ||||| || || Sbjct 6703761 TCCAAGACCAGCCCCTCTCTGT--CTT-CCCACAGCATCAATCTCATCAATGAAGACAAT 6703705 Query 10993 ACACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACAC 11051 || || | ||| || ||| || || | || | |||||| ||||| |||| Sbjct 6703704 GCAAGG-GGCTTTGGACTTGGCCTTCTCGAACAAGTCCCTCACTCTCGAAGCACCCACAC 6703646 Query 11052 CCACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCAC 11111 ||||||||| ||| ||||| | | ||| | ||| || ||| || || | || | Sbjct 6703645 CCACAAACAGTTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCCTCTC 6703586 Query 11112 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCAC 11171 | || | ||| ||||| || || ||||| || || ||||| || |||| ||| | Sbjct 6703585 CGGCCACGGCCCGGGCCAGAAGAGTCTTTCCGGTACCAGGAGGTCCAACGAGGAGGCACC 6703526 Query 11172 CACGTGGGATCCTGGCACCACTTCCAAAGTAGCGCTCAGGTTGTTTAAGGAAGTCCACGA 11231 | |||||| |||| ||| || ||| ||||| | ||| | ||| || || | Sbjct 6703525 CTTTTGGGATTTTGGCTCCAAGAGCAGTGTACTTATCAGGGTTTTTCAAGAAATCGACCA 6703466 Query 11232 TTTCTTCCAATTCATCCTTCGC 11253 ||| | || |||| |||||| Sbjct 6703465 CTTCCTGCAGTTCAAGCTTCGC 6703444 >seq49 Length=1248075 Score = 84.2 bits (92), Expect = 3e-11 Identities = 238/360 (66%), Gaps = 12/360 (3%) Strand=Plus/Plus Query 10819 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 10878 |||||| || || | ||| || || || || |||| ||||| || | ||||| Sbjct 901120 GTCAAGAATGTCTGCCCTGTTTGTGGCAGCAATTACAATAATGCCAGTGTTTCCCTCAAA 901179 Query 10879 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCAT 10938 |||||||| ||||| | || || |||| ||| ||||| | |||||||||| | Sbjct 901180 CCCATCCATTTCAGTTAGAAGCTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCACC--- 901236 Query 10939 ACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 |||| || | || | ||| || || || ||||||||||| | || || || || Sbjct 901237 ACCAATTCCAGTACCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAACACAATGCA 901296 Query 10996 CGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGGACTCTCTTGGCACCGACACCC 11053 || |||||| ||| |||| |||| ||| || || | ||||| | ||| Sbjct 901297 AGGAGCATTTTCCTTGGC--CTTCTTGAAGAGATCACGAACACGAGAAGCACCAATACCG 901354 Query 11054 ACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACC 11112 |||||||| || ||||| | || | ||| || | || || ||||| | |||||| Sbjct 901355 ACAAACATCTCAACAAACTCGGAACCTGAA-ATGGAGAAAAATGGGACACCTGCTTCACC 901413 Query 11113 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACC 11172 || ||||| ||| || || |||||||| || || || || ||||||| |||| Sbjct 901414 TGCAATGGCCTTGGCTAGCAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACC 901473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597345744800160