Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq6 122 1e-22
seq1 111 2e-19
seq49 84.2 3e-11
>seq6
Length=5093711
Score = 122 bits (134), Expect = 1e-22
Identities = 162/225 (72%), Gaps = 9/225 (4%)
Strand=Plus/Minus
Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117
||| || || ||||| |||||||| | ||| || ||||| || ||||||||| || ||
Sbjct 4852219 GTGCAGGCCTTCGTCTCGGGAGATCAATTCGTTTGAGAATGTCAATCCTGGCATAAGGCC 4852160
Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177
|| ||||||| |||||| || || || || ||||||||||| || || ||||||||
Sbjct 4852159 TCGTTTCTTCAGCCAGAATATGGCGCAGAAACTTCCCGAGAAGAAAATACCTTCCACACA 4852100
Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG---TGTCAAACCACTTCAT 126234
||||| ||| |||||||| ||||| ||||| | ||| | ||| || |
Sbjct 4852099 TGCGAAGCCAATCAGACGCTCTGCAAA------CGACTCGGAGCCGTCGATCCATTTTAG 4852046
Query 126235 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279
|||||||| || || ||| ||| || || || |||| ||| ||
Sbjct 4852045 CGCCCACTCGGCTTTCTTCGCGACGCAAGGTACAGTCTCGATGGC 4852001
>seq1
Length=7185522
Score = 111 bits (122), Expect = 2e-19
Identities = 257/382 (67%), Gaps = 8/382 (2%)
Strand=Plus/Minus
Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTC---GC 10932
|||||||||||||||||||||||| |||||||| ||||| || | || |||||| |
Sbjct 6703821 AAAGCCATCCATCTCAGTCAAGAGCTGATTGATCGTTTGCTCTCTCTCGTCATTCCCACC 6703762
Query 10933 GGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 10992
| |||| || | || || ||| || || || ||||| ||||| ||||| || ||
Sbjct 6703761 TCCAAGACCAGCCCCTCTCTGT--CTT-CCCACAGCATCAATCTCATCAATGAAGACAAT 6703705
Query 10993 ACACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACAC 11051
|| || | ||| || ||| || || | || | |||||| ||||| ||||
Sbjct 6703704 GCAAGG-GGCTTTGGACTTGGCCTTCTCGAACAAGTCCCTCACTCTCGAAGCACCCACAC 6703646
Query 11052 CCACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCAC 11111
||||||||| ||| ||||| | | ||| | ||| || ||| || || | || |
Sbjct 6703645 CCACAAACAGTTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCCTCTC 6703586
Query 11112 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCAC 11171
| || | ||| ||||| || || ||||| || || ||||| || |||| ||| |
Sbjct 6703585 CGGCCACGGCCCGGGCCAGAAGAGTCTTTCCGGTACCAGGAGGTCCAACGAGGAGGCACC 6703526
Query 11172 CACGTGGGATCCTGGCACCACTTCCAAAGTAGCGCTCAGGTTGTTTAAGGAAGTCCACGA 11231
| |||||| |||| ||| || ||| ||||| | ||| | ||| || || |
Sbjct 6703525 CTTTTGGGATTTTGGCTCCAAGAGCAGTGTACTTATCAGGGTTTTTCAAGAAATCGACCA 6703466
Query 11232 TTTCTTCCAATTCATCCTTCGC 11253
||| | || |||| ||||||
Sbjct 6703465 CTTCCTGCAGTTCAAGCTTCGC 6703444
>seq49
Length=1248075
Score = 84.2 bits (92), Expect = 3e-11
Identities = 238/360 (66%), Gaps = 12/360 (3%)
Strand=Plus/Plus
Query 10819 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 10878
|||||| || || | ||| || || || || |||| ||||| || | |||||
Sbjct 901120 GTCAAGAATGTCTGCCCTGTTTGTGGCAGCAATTACAATAATGCCAGTGTTTCCCTCAAA 901179
Query 10879 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCAT 10938
|||||||| ||||| | || || |||| ||| ||||| | |||||||||| |
Sbjct 901180 CCCATCCATTTCAGTTAGAAGCTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCACC--- 901236
Query 10939 ACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995
|||| || | || | ||| || || || ||||||||||| | || || || ||
Sbjct 901237 ACCAATTCCAGTACCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAACACAATGCA 901296
Query 10996 CGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGGACTCTCTTGGCACCGACACCC 11053
|| |||||| ||| |||| |||| ||| || || | ||||| | |||
Sbjct 901297 AGGAGCATTTTCCTTGGC--CTTCTTGAAGAGATCACGAACACGAGAAGCACCAATACCG 901354
Query 11054 ACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACC 11112
|||||||| || ||||| | || | ||| || | || || ||||| | ||||||
Sbjct 901355 ACAAACATCTCAACAAACTCGGAACCTGAA-ATGGAGAAAAATGGGACACCTGCTTCACC 901413
Query 11113 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACC 11172
|| ||||| ||| || || |||||||| || || || || ||||||| ||||
Sbjct 901414 TGCAATGGCCTTGGCTAGCAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACC 901473
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597345744800160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |