Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq124 104 3e-17 seq15 102 9e-17 seq21 100 3e-16 seq14 100 3e-16 seq4 100 3e-16 >seq124 Length=632428 Score = 104 bits (114), Expect = 3e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||||||||||||| ||||| ||||||||||| ||||||||||| || | Sbjct 447478 ACGAAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCAGCCAGAGTGCGGCC 447537 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || || || ||||| ||||| || || | ||||||||| | ||| | | ||| || Sbjct 447538 ATCTTCGAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATACCCTCTTT 447597 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 || ||| || || | | | | || || ||| |||||| || | || Sbjct 447598 ATCTTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGCT---TTCCACCTCCAAGGT 447654 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||| || || || || || || ||||||||||| Sbjct 447655 GATGGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||||||| | || ||| ||||||||||| || || |||| ||||| |||| || Sbjct 447029 ACCAAATGCGAAGTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGTCTTCC 447088 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||| |||||||| || || | ||||||||| | ||| | || ||| || | | || Sbjct 447089 AGTTGCTTTCCAGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTAT-CTTG 447147 Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGT 42175 | |||| | | ||| | | | || || ||| || || || | ||||| || Sbjct 447148 AATTTTAGCCTTCACGTTGTCGATGGTATC---CGAACTCTCAACCTCCAGAGTGATTGT 447204 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||| ||||||| ||||| ||||| || |||||| Sbjct 447205 TTTTCCCGTTAAGGTCTTCACAAAAATCTGCATT 447238 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| |||||||| || |||||||| | || || |||||||| || ||||| Sbjct 447274 CTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGTCCATCTTCAAGCTGCTTGCCTGCGAA 447333 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || | |||||||| | || | | ||||||| | ||| | || | ||||| Sbjct 447334 AATTAGCCTTTGCTGGTCTGGAGGGATACCTTCCTTGT-CTTGAATCTTAGCTTTGACAT 447392 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| ||| || || | ||||| || || ||||| ||||| || | Sbjct 447393 TGTCAATTGTGTCGGAGCTTTCAACCTCCAATGTGATAGTCTTTCCCGTGAGCGTTTTGA 447452 Query 42196 CAAAGATTTGCATT 42209 | || ||||||||| Sbjct 447453 CGAAAATTTGCATT 447466 >seq15 Length=2492501 Score = 102 bits (112), Expect = 9e-17 Identities = 143/197 (73%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||||||||||||||||| | | || || |||||||| ||||| || Sbjct 255647 CTCCTTCTGGATGTTGTAATCAGCCAGAGTCCTCCCATCCTCCAGCTGCTTTCCAGCAAA 255706 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | | ||||||||| | || | | |||||||||| ||| | || | | ||| Sbjct 255707 GATCAACCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCC-TGAATCTTCGCCTTCACGT 255765 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||| || |||| ||||| || | |||||||| || || || || |||| Sbjct 255766 TGTCAATCGTATCTGAGCTC---TCCACCTCCAAGGTGATGGTCTTCCCGGTAAGGGTCT 255822 Query 42193 TTACAAAGATTTGCATT 42209 | || ||||| |||||| Sbjct 255823 TCACGAAGATCTGCATT 255839 >seq21 Length=2013095 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||||||||||||||| ||||||| | || || |||||||| || ||||| Sbjct 1809875 CTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTGCTTCCCTGCGAA 1809816 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || | ||||| || | || | | |||||||||| ||| |||| | ||| | Sbjct 1809815 AATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCC-TGAATTTTGGCTTTCACAT 1809757 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| ||||| || | |||||||| || || || | || | Sbjct 1809756 TGTCAATGGTGTCGGAGCTC---TCCACCTCCAGAGTGATGGTCTTCCCAGTCAAGGTTT 1809700 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||||||||| Sbjct 1809699 TCACAAAGATTTGCAT 1809684 >seq14 Length=2855554 Score = 100 bits (110), Expect = 3e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| || || | |||||| |||| ||| ||||| || || |||||||| ||| Sbjct 999342 CCGCCTCGCAACCGAAGCACCAAGTGCAGTGTCGATTCCTTCTGTATGTTGTAATCTGCC 999283 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||||| | || ||||| ||||||||||| || || || | ||| ||||| | ||| Sbjct 999282 AGAGTCCTACCATCTTCTAGTTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCAGGTGGG 999223 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | || ||||||||| ||| || ||| | | | | || || |||| ||| Sbjct 999222 ATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTGTCAATGGTATCAGAGCTC---TCC 999166 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| || ||||| || | ||||| ||||| || ||||| Sbjct 999165 ACTTCCAAAGTGATCGTCTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 999116 >seq4 Length=5448771 Score = 100 bits (110), Expect = 3e-16 Identities = 144/199 (72%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| || || || || |||| || |||||||||||||| || Sbjct 199582 CTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAA 199641 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| ||||||||||| | || | | |||||||||| ||| | |||| || | Sbjct 199642 GATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCC-TGAATCTTTGCCTTCACAT 199700 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | || || |||| || || |||| || ||||| || ||||| | ||| | Sbjct 199701 TGTCGATGGTATCGGAGCTC---TCAACCTCGAGAGTTATGGTCTTCCCCGTCAACGTTT 199757 Query 42193 TTACAAAGATTTGCATTTT 42211 | |||||||| ||||| || Sbjct 199758 TCACAAAGATCTGCATATT 199776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543205656751680