Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq124 104 3e-17
seq15 102 9e-17
seq21 100 3e-16
seq14 100 3e-16
seq4 100 3e-16
>seq124
Length=632428
Score = 104 bits (114), Expect = 3e-17
Identities = 155/219 (71%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | ||||||||||||||| ||||| ||||||||||| ||||||||||| || |
Sbjct 447478 ACGAAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCAGCCAGAGTGCGGCC 447537
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || || || ||||| ||||| || || | ||||||||| | ||| | | ||| ||
Sbjct 447538 ATCTTCGAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATACCCTCTTT 447597
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169
|| ||| || || | | | | || || ||| |||||| || | ||
Sbjct 447598 ATCTTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGCT---TTCCACCTCCAAGGT 447654
Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||||||| || || || || || || |||||||||||
Sbjct 447655 GATGGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693
Score = 96.9 bits (106), Expect = 4e-15
Identities = 152/214 (71%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
||||||||| | || ||| ||||||||||| || || |||| ||||| |||| ||
Sbjct 447029 ACCAAATGCGAAGTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGTCTTCC 447088
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
|| ||||| |||||||| || || | ||||||||| | ||| | || ||| || | | ||
Sbjct 447089 AGTTGCTTTCCAGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTAT-CTTG 447147
Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGT 42175
| |||| | | ||| | | | || || ||| || || || | ||||| ||
Sbjct 447148 AATTTTAGCCTTCACGTTGTCGATGGTATC---CGAACTCTCAACCTCCAGAGTGATTGT 447204
Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209
||| ||||||| ||||| ||||| || ||||||
Sbjct 447205 TTTTCCCGTTAAGGTCTTCACAAAAATCTGCATT 447238
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/194 (72%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||||||||| |||||||| || |||||||| | || || |||||||| || |||||
Sbjct 447274 CTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGTCCATCTTCAAGCTGCTTGCCTGCGAA 447333
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
|| || | |||||||| | || | | ||||||| | ||| | || | |||||
Sbjct 447334 AATTAGCCTTTGCTGGTCTGGAGGGATACCTTCCTTGT-CTTGAATCTTAGCTTTGACAT 447392
Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | |||||| ||| || || | ||||| || || ||||| ||||| || |
Sbjct 447393 TGTCAATTGTGTCGGAGCTTTCAACCTCCAATGTGATAGTCTTTCCCGTGAGCGTTTTGA 447452
Query 42196 CAAAGATTTGCATT 42209
| || |||||||||
Sbjct 447453 CGAAAATTTGCATT 447466
>seq15
Length=2492501
Score = 102 bits (112), Expect = 9e-17
Identities = 143/197 (73%), Gaps = 8/197 (4%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||||||||||||||||| | | || || |||||||| ||||| ||
Sbjct 255647 CTCCTTCTGGATGTTGTAATCAGCCAGAGTCCTCCCATCCTCCAGCTGCTTTCCAGCAAA 255706
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| | | ||||||||| | || | | |||||||||| ||| | || | | |||
Sbjct 255707 GATCAACCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCC-TGAATCTTCGCCTTCACGT 255765
Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192
| | | ||| || |||| ||||| || | |||||||| || || || || ||||
Sbjct 255766 TGTCAATCGTATCTGAGCTC---TCCACCTCCAAGGTGATGGTCTTCCCGGTAAGGGTCT 255822
Query 42193 TTACAAAGATTTGCATT 42209
| || ||||| ||||||
Sbjct 255823 TCACGAAGATCTGCATT 255839
>seq21
Length=2013095
Score = 100 bits (110), Expect = 3e-16
Identities = 142/196 (72%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| ||||||||||||||||| ||||||| | || || |||||||| || |||||
Sbjct 1809875 CTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTGCTTCCCTGCGAA 1809816
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
|| || | ||||| || | || | | |||||||||| ||| |||| | ||| |
Sbjct 1809815 AATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCC-TGAATTTTGGCTTTCACAT 1809757
Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192
| | | ||||| |||| ||||| || | |||||||| || || || | || |
Sbjct 1809756 TGTCAATGGTGTCGGAGCTC---TCCACCTCCAGAGTGATGGTCTTCCCAGTCAAGGTTT 1809700
Query 42193 TTACAAAGATTTGCAT 42208
| ||||||||||||||
Sbjct 1809699 TCACAAAGATTTGCAT 1809684
>seq14
Length=2855554
Score = 100 bits (110), Expect = 3e-16
Identities = 161/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|| |||| || || | |||||| |||| ||| ||||| || || |||||||| |||
Sbjct 999342 CCGCCTCGCAACCGAAGCACCAAGTGCAGTGTCGATTCCTTCTGTATGTTGTAATCTGCC 999283
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
||||||| | || ||||| ||||||||||| || || || | ||| ||||| | |||
Sbjct 999282 AGAGTCCTACCATCTTCTAGTTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCAGGTGGG 999223
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158
| || ||||||||| ||| || ||| | | | | || || |||| |||
Sbjct 999222 ATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTGTCAATGGTATCAGAGCTC---TCC 999166
Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || | ||||| || ||||| || | ||||| ||||| || |||||
Sbjct 999165 ACTTCCAAAGTGATCGTCTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 999116
>seq4
Length=5448771
Score = 100 bits (110), Expect = 3e-16
Identities = 144/199 (72%), Gaps = 8/199 (4%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || |||||||| || || || || |||| || |||||||||||||| ||
Sbjct 199582 CTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAA 199641
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
||||| ||||||||||| | || | | |||||||||| ||| | |||| || |
Sbjct 199642 GATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCC-TGAATCTTTGCCTTCACAT 199700
Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192
| | | || || |||| || || |||| || ||||| || ||||| | ||| |
Sbjct 199701 TGTCGATGGTATCGGAGCTC---TCAACCTCGAGAGTTATGGTCTTCCCCGTCAACGTTT 199757
Query 42193 TTACAAAGATTTGCATTTT 42211
| |||||||| ||||| ||
Sbjct 199758 TCACAAAGATCTGCATATT 199776
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543205656751680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |