Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq14 134 1e-26
seq124 131 2e-25
seq4 123 2e-23
seq15 93.3 4e-14
seq11 84.2 2e-11
>seq14
Length=2855554
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||| | ||||||||| ||||||| || ||||| || || || |||||||| ||
Sbjct 998658 CCACCGCGAAGTCTAAGCACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCA 998599
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||| || | || || || ||||| || || | || |||| |||||||||||||||
Sbjct 998598 AGGGTTCGACCATCCTCGAGTTGCTTACCAGCGAAGATAAGCCTTTGCTGGTCGGGAGGA 998539
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
||||| ||||| ||||| || ||| ||||||| || | ||||| |||||
Sbjct 998538 ATTCCCTCTTTATCTTGGATCTTTGCCTTTACATTGTCAATGGTATCCGAACTTTCCACC 998479
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | || ||||| || | |||||| ||||| ||||||||
Sbjct 998478 TCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 998432
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| |||||||||| |||||| | ||| | || ||||| ||||| ||||||||||||||
Sbjct 999570 CCACCGCGCAATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 999511
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || | | ||||| || |||||||| || | || | || ||| ||||| || ||
Sbjct 999510 AAAGTTCTGCCATCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGG 999451
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| || || || ||||| || ||| ||| ||| || | ||||| | ||||||
Sbjct 999450 ATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCCACT 999391
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | ||| | |||||||| ||||| ||||| || ||||| |||||
Sbjct 999390 TCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
||||| ||||| | |||||| | || | |||||||| || || ||||||||||||||
Sbjct 999342 CCGCCTCGCAACCGAAGCACCAAGTGCAGTGTCGATTCCTTCTGTATGTTGTAATCTGCC 999283
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || | | ||||| || ||||| || ||| | || |||| ||| ||||| || ||
Sbjct 999282 AGAGTCCTACCATCTTCTAGTTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCAGGTGGG 999223
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| || || || ||||| | | || ||||| ||| || | |||||| | |||||
Sbjct 999222 ATGCCCTCCTTGTCTTGGA-TCTTGGCTTTCACATTGTCAATGGTATCAGAGCTCTCCAC 999164
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| | ||| | |||||||| ||||| || || || ||||| |||||
Sbjct 999163 TTCCAAAGTGATCGTCTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 999116
Score = 100 bits (110), Expect = 3e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
|||||| | ||| | || |||||||| || || ||||| || || | || || ||||
Sbjct 998872 AAGCACCAAATGCAAAGTAGATTCTTTCTGGATATTGTAGTCAGCAAGAGTACGGCCGTC 998813
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||||||||||| || ||| |||| |||| ||| || || ||||| || || || || ||
Sbjct 998812 CTCAAGCTGCTTACCAGCAAAAATCAGCCTCTGTTGATCAGGAGGGATACCCTCCTTATC 998753
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
||| ||||| ||| ||| || | |||||| ||||| || | || | |||
Sbjct 998752 TTGGATTTTAGCCTTCACATTGTCAATCGTATCAGAACTTTCCACCTCAAGCGTGATGGT 998693
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| || | || || || || ||||||||
Sbjct 998692 TTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 998660
>seq124
Length=632428
Score = 131 bits (144), Expect = 2e-25
Identities = 159/214 (74%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||||||||||| || || || ||||||||||||||||| || | || || | |||
Sbjct 447254 AGCACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGTCCATCT 447313
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|||||||||||||| || |||| |||| |||||||| ||||| || ||||| || |||
Sbjct 447314 TCAAGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGGAGGGATACCTTCCTTGTCT 447373
Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| | | || ||||| ||| || | ||| || | || || || | || | ||
Sbjct 447374 TG-AATCTTAGCTTTGACATTGTCAATTGTGTCGGAGCTTTCAACCTCCAATGTGATAGT 447432
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
||| || || | ||||| |||||||||||||||
Sbjct 447433 CTTTCCCGTGAGCGTTTTGACGAAAATTTGCATT 447466
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||| || | ||||| | || | ||| || |||||||| ||||||||||| ||
Sbjct 447695 CCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCC 447754
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||| || ||||||| |||||||| || || | || |||| ||||||||| || |||
Sbjct 447755 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGA 447814
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|||||||| || || || ||||| ||||||| || | |||||| || ||
Sbjct 447815 ATTCCTTCCTTGTCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACC 447874
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | || |||||||| | |||||| || || || |||||
Sbjct 447875 TCAAGGGTAATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921
Score = 86.0 bits (94), Expect = 6e-12
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
||||| |||||||||||||| || || || | || | ||| ||| || ||||| ||
Sbjct 354456 GTCGACTCTTTTTGAATGTTATAGTCGGCCAAAGTCCTGCCGTGTTCCAGTTGCTTTCCA 354397
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| |||| | || ||||||||| || || || || ||||||||||| || || ||
Sbjct 354396 GCGAAAATCAACCTCTGCTGGTCTGGTGGGATGCCCTCTTTTTCTTG-ATCTTGGCYTTC 354338
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCA-CTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425
||| || | |||||| | |||| | || | || | ||| || || || | ||
Sbjct 354337 ACATTGTCGATGGTATCAGAGCTTTCCACCCTCCAAGGTGATGGTTTTTCCAGTGAGGGT 354278
Query 64426 TTTTACGAAAATTTGCAT 64443
||| ||||| ||||||||
Sbjct 354277 TTTCACGAAGATTTGCAT 354260
Score = 82.4 bits (90), Expect = 8e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
||||| ||||||||||| || || || || | || | ||||||| || ||||| ||
Sbjct 447041 GTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGTCTTCCAGTTGCTTTCCA 447100
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359
|| |||| |||| ||||||||| || || || || ||||| ||||| |||||
Sbjct 447101 GCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCTTGAATTTT 447153
>seq4
Length=5448771
Score = 123 bits (136), Expect = 2e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || || | || | ||| || || | ||| || || || || ||||||||||| ||
Sbjct 199546 ACCACCACGGAGCCTTAACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGC 199605
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||| || |||| ||||||||||| || ||| | ||||| ||||||||||| || ||
Sbjct 199606 TAGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGG 199665
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||||| || || || || || ||| ||| ||| || | ||||| | || ||
Sbjct 199666 TATTCCCTCCTTGTCCTGAATCTTTGCCTTCACATTGTCGATGGTATCGGAGCTCTCAAC 199725
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| | ||||| |||||| || ||||| ||||| || || || ||||| ||
Sbjct 199726 CTCGAGAGTTATGGTCTTCCCCGTCAACGTTTTCACAAAGATCTGCATATT 199776
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || || | || ||||| || || | || || ||||| || |||||||| || ||
Sbjct 205221 ACCTCCACGGAGCCTTAGCACAAGGTGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGC 205280
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || | || || |||||||| || ||| ||||||| ||||||||||| || ||
Sbjct 205281 AAGAGTTCGACCATCCTCCAGCTGCTTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGG 205340
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||||| || || || || || || ||| ||| || | |||||| || ||
Sbjct 205341 TATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCGATGGTATCAGAACTCTCGAC 205400
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | ||||| |||||| || |||| ||||| ||||| || |||||
Sbjct 205401 CTCGAGAGTTATGGTCTTCCCTGTCAGCGTTTTCACGAAGATCTGCAT 205448
>seq15
Length=2492501
Score = 93.3 bits (102), Expect = 4e-14
Identities = 149/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || || |||| || || || || || ||||||||||| || | || | | | ||
Sbjct 255626 AAGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCCAGAGTCCTCCCATC 255685
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|| |||||||| || ||| | || | || ||||||||| ||||||||||| || || ||
Sbjct 255686 CTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTC 255745
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || ||| || || | ||||| | ||||| || | || | |||
Sbjct 255746 CTGAATCTTCGCCTTCACGTTGTCAATCGTATCTGAGCTCTCCACCTCCAAGGTGATGGT 255805
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
||| ||||| | || || ||||| || ||||||
Sbjct 255806 CTTCCCGGTAAGGGTCTTCACGAAGATCTGCATT 255839
>seq11
Length=3405507
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313
|||| ||||||||||| || |||| ||||| | || || |||||||| |||||| | |
Sbjct 146844 CTTTCTGAATGTTGTAGTCGGCGAGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGA 146903
Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342
| |||| |||||||||||| ||||| |||
Sbjct 146904 TCAGCCTCTGCTGGTCGGGGGGAATACCT 146932
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499638229670880
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