Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 4e-14 seq14 87.8 2e-12 seq4 86.0 6e-12 seq124 84.2 2e-11 seq21 84.2 2e-11 seq52 82.4 8e-11 >seq6 Length=5093711 Score = 93.3 bits (102), Expect = 4e-14 Identities = 345/531 (65%), Gaps = 20/531 (4%) Strand=Plus/Plus Query 52318 TCGAGCACGTGCCGTGCGTTCGCAAA-AAGGCTCAGTGGGCAATGAAGTGGATCGAGAGC 52376 ||||| || || ||||| ||| || || || ||||||| | || |||||||| | Sbjct 4852005 TCGAGACTGTACCTTGCGT-CGCGAAGAAAGCCGAGTGGGCGCTAAAATGGATCGA---C 4852060 Query 52377 GACACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttt 52436 | | ||| || | || ||||| || | | |||||| || || || | || || Sbjct 4852061 GGCTCCGAGTCGTTTGCAGAGCGTCTGATTGGCTTCGCATGTGTGGAAGGTATTTTCTTC 4852120 Query 52437 tCCGGCAGCTTTGCCGCCATCTTTTACATTAA--AACGAAAGGCATAATGCCCGGCCTGA 52494 || || || || |||||| || | | || ||||| ||| | ||||| || ||| Sbjct 4852121 TCGGGAAGTTTCTGCGCCATATTCTGGCTGAAGAAACGA--GGCCTTATGCCAGGATTGA 4852178 Query 52495 CGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGC---C 52551 | ||| ||||| ||||| || || |||||||| |||||| || || |||||| | Sbjct 4852179 CATTCTCAAACGAATTGATCTCCCGAGACGAAGGCCTGCACTGCGATTTCGCGTGCTTGC 4852238 Query 52552 TCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCA 52611 | |||| || | | || | || || |||| | | | || || Sbjct 4852239 TGTACTCTCTGATGAG---GA---ATCAACTGAGCGACGACAAAGTGAAGGGGATCGTCC 4852292 Query 52612 AGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGG 52671 | ||||||||| |||||| | ||| || | | || |||||| || | || ||| Sbjct 4852293 GGCAGGCGGTGGATATCGAGAGGGAATTCGTGTGCGATGCACTGCCGTGCGCGTTGGTGG 4852352 Query 52672 GCATGAACGCGCAGTCC-ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTG 52730 | ||||||| || || ||| |||||||||||||||| || || || || || |||| Sbjct 4852353 GGATGAACG-GCGATCTGATGAGCGAGTACATCGAGTTCGTTGCTGACCGGTTGCTGGTA 4852411 Query 52731 CAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATT 52790 || ||||| ||| | ||| | | || ||||| || | ||| | || Sbjct 4852412 GCCCTAGGGCACAGCAAGATTTACAATGTACAGAACCCGTTCGATTGGATGGAATTGATA 4852471 Query 52791 TCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841 ||||| |||| || |||||||| ||||||||| | || || |||||| || Sbjct 4852472 TCGCTGCAGGGGAAAACCAACTTCTTCGAGAAGAGGGTGGGAGAGTATCAG 4852522 >seq14 Length=2855554 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || || ||||| || | || ||||| | |||| |||||||| |||||||| || ||| Sbjct 999570 CCACCGCGCAATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 999511 Query 138447 CATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | ||| | || | || |||||||| || || | |||| | | ||||||||| || | Sbjct 999510 AA-AGTTCTGCCA-TCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTG 999453 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCC 138564 | || || || ||||| ||| | |||| || | | || | ||| |||| |||| Sbjct 999452 GGATGCCCTCCTTGTCT-TGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCC 999394 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | || || ||||||| ||||| |||||||||||||| Sbjct 999393 ACTTCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || ||||||||||| || || ||| ||| ||||| |||||||| || | | Sbjct 999765 GACTCTTTCTGAATGTTGTAATCCGCCAAAGTTCGCCCATCCTCCAGTTGTTTCCCAGCA 999706 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| | | |||||| || ||||| || || || ||||| ||| | |||| || | Sbjct 999705 AAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTC-TTGAATCTTTGCCTTCAC 999647 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | || ||||| | ||| | ||| || || ||||| || | Sbjct 999646 GTTG-TCGATTGTGTCCGAGCTTTCGACCTCCAACGTGATCGTCTTCCCTGTCAGTGTCT 999588 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 999587 TCACAAAGATCTGCAT 999572 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||||||||| || | || || || | | || ||||| || |||||||| || | Sbjct 999342 CCGCCTCGCAACCGAAGCACCAAGTGCAGTGTCGATTCCTTCTGTATGTTGTAATCTGCC 999283 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | || || ||||| ||||| | | |||| || | ||||||||| || || Sbjct 999282 AGAGTCCTACCATCTTCTAGTTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCAGGTGGG 999223 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || ||| | ||||| | | ||| || | |||||| Sbjct 999222 ATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTGT-CAATGGTATCAGAGCTCTCCAC 999164 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||| || || |||| || || |||||||||||||| Sbjct 999163 TTCCAAAGTGATCGTCTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 999116 >seq4 Length=5448771 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 138412 TGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGT 138471 |||| | | ||||| || || |||||||||||| | ||| || ||||| || || Sbjct 205246 TGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGACCATCCTCCAGCTGC 205305 Query 138472 TTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTT 138531 ||||| | | | || |||||||| |||||||| ||||| || || ||||| ||| | || Sbjct 205306 TTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTC-CTGAATCTT 205364 Query 138532 TG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGT 138590 | || | | || | ||| || | ||| ||||||| || | || || || || Sbjct 205365 GGCCTTCACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCTGT 205424 Query 138591 CAGAGTTTTTACAAAAATCTGCAT 138614 ||| ||||| || || |||||||| Sbjct 205425 CAGCGTTTTCACGAAGATCTGCAT 205448 >seq124 Length=632428 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | |||| ||||| ||||| |||||||| | Sbjct 447467 CCCCCACGAAGACGAAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCAGCC 447526 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || |||||||||||||| | | || || | ||| |||||||| || Sbjct 447527 AGAGTGCGGCCATCTTCGAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGA 447586 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| ||||| || ||| || || | |||| || | ||| || | ||||| Sbjct 447587 ATACCCTCTTTATCTTGGATCTTGGCCTTCACATTG-TCGATGGTATCAGAGCTTTCCAC 447645 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| ||||| || ||||| || || || ||||| Sbjct 447646 CTCCAAGGTGATGGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693 >seq21 Length=2013095 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||| |||||| || ||| | |||||| || || || |||| Sbjct 1809649 GACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTACCGTCCTCCAGCTGCTTTCCGGCG 1809590 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || | ||| ||||| || || || || |||||||| ||| || |||| | Sbjct 1809589 AAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGGATCTTAGCCTTTACA 1809530 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | |||||| | ||| ||||| | || | ||||| || |||| || || Sbjct 1809529 TTGT-CTATGGTGTCCGAACTCTCAACCTCCAGGGTAATGGTTTTCCCGGTCAACGTCTT 1809471 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 1809470 GACGAAAATCTGCAT 1809456 >seq52 Length=1204374 Score = 82.4 bits (90), Expect = 8e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 154326 AAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATG 154385 || ||||||||| || || |||||| ||| ||| || |||| |||| ||| Sbjct 503363 AAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACATAGTGTGGTATGTTTTGATA 503422 Query 154386 GCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGA 154445 || ||| |||||||| |||||| || | || || | ||| ||||||||||| || Sbjct 503423 GCAGATTCAATATCATCCTTGTGAATACCAACAGCAACCCTCATAAGCATGTGCTGAGGC 503482 Query 154446 CGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCG 154505 | || |||| | | || ||||||||| ||| |||| || |||||| |||| Sbjct 503483 CTCTCCACGACCTTCCCCTGAACCTTCAAGAGGTATGACCTTTCCAGAGTTTTGAAACCA 503542 Query 154506 AAATACTTGTATTCAAAATCTAGCTCAT 154533 ||||| | ||| ||||| || | |||| Sbjct 503543 AAATAGTCGTAATCAAAGTCACGGTCAT 503570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496255874149440