Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq6 93.3 4e-14
seq14 87.8 2e-12
seq4 86.0 6e-12
seq124 84.2 2e-11
seq21 84.2 2e-11
seq52 82.4 8e-11
>seq6
Length=5093711
Score = 93.3 bits (102), Expect = 4e-14
Identities = 345/531 (65%), Gaps = 20/531 (4%)
Strand=Plus/Plus
Query 52318 TCGAGCACGTGCCGTGCGTTCGCAAA-AAGGCTCAGTGGGCAATGAAGTGGATCGAGAGC 52376
||||| || || ||||| ||| || || || ||||||| | || |||||||| |
Sbjct 4852005 TCGAGACTGTACCTTGCGT-CGCGAAGAAAGCCGAGTGGGCGCTAAAATGGATCGA---C 4852060
Query 52377 GACACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttt 52436
| | ||| || | || ||||| || | | |||||| || || || | || ||
Sbjct 4852061 GGCTCCGAGTCGTTTGCAGAGCGTCTGATTGGCTTCGCATGTGTGGAAGGTATTTTCTTC 4852120
Query 52437 tCCGGCAGCTTTGCCGCCATCTTTTACATTAA--AACGAAAGGCATAATGCCCGGCCTGA 52494
|| || || || |||||| || | | || ||||| ||| | ||||| || |||
Sbjct 4852121 TCGGGAAGTTTCTGCGCCATATTCTGGCTGAAGAAACGA--GGCCTTATGCCAGGATTGA 4852178
Query 52495 CGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGC---C 52551
| ||| ||||| ||||| || || |||||||| |||||| || || |||||| |
Sbjct 4852179 CATTCTCAAACGAATTGATCTCCCGAGACGAAGGCCTGCACTGCGATTTCGCGTGCTTGC 4852238
Query 52552 TCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCA 52611
| |||| || | | || | || || |||| | | | || ||
Sbjct 4852239 TGTACTCTCTGATGAG---GA---ATCAACTGAGCGACGACAAAGTGAAGGGGATCGTCC 4852292
Query 52612 AGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGG 52671
| ||||||||| |||||| | ||| || | | || |||||| || | || |||
Sbjct 4852293 GGCAGGCGGTGGATATCGAGAGGGAATTCGTGTGCGATGCACTGCCGTGCGCGTTGGTGG 4852352
Query 52672 GCATGAACGCGCAGTCC-ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTG 52730
| ||||||| || || ||| |||||||||||||||| || || || || || ||||
Sbjct 4852353 GGATGAACG-GCGATCTGATGAGCGAGTACATCGAGTTCGTTGCTGACCGGTTGCTGGTA 4852411
Query 52731 CAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATT 52790
|| ||||| ||| | ||| | | || ||||| || | ||| | ||
Sbjct 4852412 GCCCTAGGGCACAGCAAGATTTACAATGTACAGAACCCGTTCGATTGGATGGAATTGATA 4852471
Query 52791 TCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841
||||| |||| || |||||||| ||||||||| | || || |||||| ||
Sbjct 4852472 TCGCTGCAGGGGAAAACCAACTTCTTCGAGAAGAGGGTGGGAGAGTATCAG 4852522
>seq14
Length=2855554
Score = 87.8 bits (96), Expect = 2e-12
Identities = 162/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446
|| || ||||| || | || ||||| | |||| |||||||| |||||||| || |||
Sbjct 999570 CCACCGCGCAATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 999511
Query 138447 CATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505
| ||| | || | || |||||||| || || | |||| | | ||||||||| || |
Sbjct 999510 AA-AGTTCTGCCA-TCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTG 999453
Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCC 138564
| || || || ||||| ||| | |||| || | | || | ||| |||| ||||
Sbjct 999452 GGATGCCCTCCTTGTCT-TGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCC 999394
Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| || | || | || || ||||||| ||||| ||||||||||||||
Sbjct 999393 ACTTCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344
Score = 87.8 bits (96), Expect = 2e-12
Identities = 139/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||| || ||||||||||| || || ||| ||| ||||| |||||||| || | |
Sbjct 999765 GACTCTTTCTGAATGTTGTAATCCGCCAAAGTTCGCCCATCCTCCAGTTGTTTCCCAGCA 999706
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| | | |||||| || ||||| || || || ||||| ||| | |||| || |
Sbjct 999705 AAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTC-TTGAATCTTTGCCTTCAC 999647
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | ||||| | || ||||| | ||| | ||| || || ||||| || |
Sbjct 999646 GTTG-TCGATTGTGTCCGAGCTTTCGACCTCCAACGTGATCGTCTTCCCTGTCAGTGTCT 999588
Query 138599 TTACAAAAATCTGCAT 138614
| ||||| ||||||||
Sbjct 999587 TCACAAAGATCTGCAT 999572
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||||||||| || | || || || | | || ||||| || |||||||| || |
Sbjct 999342 CCGCCTCGCAACCGAAGCACCAAGTGCAGTGTCGATTCCTTCTGTATGTTGTAATCTGCC 999283
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| | || || ||||| ||||| | | |||| || | ||||||||| || ||
Sbjct 999282 AGAGTCCTACCATCTTCTAGTTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCAGGTGGG 999223
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || ||| | ||||| | | ||| || | ||||||
Sbjct 999222 ATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTGT-CAATGGTATCAGAGCTCTCCAC 999164
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | ||| || || |||| || || ||||||||||||||
Sbjct 999163 TTCCAAAGTGATCGTCTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 999116
>seq4
Length=5448771
Score = 86.0 bits (94), Expect = 6e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 138412 TGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGT 138471
|||| | | ||||| || || |||||||||||| | ||| || ||||| || ||
Sbjct 205246 TGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGACCATCCTCCAGCTGC 205305
Query 138472 TTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTT 138531
||||| | | | || |||||||| |||||||| ||||| || || ||||| ||| | ||
Sbjct 205306 TTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTC-CTGAATCTT 205364
Query 138532 TG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGT 138590
| || | | || | ||| || | ||| ||||||| || | || || || ||
Sbjct 205365 GGCCTTCACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCTGT 205424
Query 138591 CAGAGTTTTTACAAAAATCTGCAT 138614
||| ||||| || || ||||||||
Sbjct 205425 CAGCGTTTTCACGAAGATCTGCAT 205448
>seq124
Length=632428
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || ||||| | |||| ||||| ||||| |||||||| |
Sbjct 447467 CCCCCACGAAGACGAAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCAGCC 447526
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || || |||||||||||||| | | || || | ||| |||||||| ||
Sbjct 447527 AGAGTGCGGCCATCTTCGAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGA 447586
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| ||||| || ||| || || | |||| || | ||| || | |||||
Sbjct 447587 ATACCCTCTTTATCTTGGATCTTGGCCTTCACATTG-TCGATGGTATCAGAGCTTTCCAC 447645
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | ||||| ||||| || ||||| || || || |||||
Sbjct 447646 CTCCAAGGTGATGGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693
>seq21
Length=2013095
Score = 84.2 bits (92), Expect = 2e-11
Identities = 137/195 (70%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||| |||||| || ||| | |||||| || || || ||||
Sbjct 1809649 GACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTACCGTCCTCCAGCTGCTTTCCGGCG 1809590
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| || | ||| ||||| || || || || |||||||| ||| || |||| |
Sbjct 1809589 AAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGGATCTTAGCCTTTACA 1809530
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
|||| | | |||||| | ||| ||||| | || | ||||| || |||| || ||
Sbjct 1809529 TTGT-CTATGGTGTCCGAACTCTCAACCTCCAGGGTAATGGTTTTCCCGGTCAACGTCTT 1809471
Query 138600 TACAAAAATCTGCAT 138614
|| |||||||||||
Sbjct 1809470 GACGAAAATCTGCAT 1809456
>seq52
Length=1204374
Score = 82.4 bits (90), Expect = 8e-11
Identities = 143/208 (69%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 154326 AAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATG 154385
|| ||||||||| || || |||||| ||| ||| || |||| |||| |||
Sbjct 503363 AAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACATAGTGTGGTATGTTTTGATA 503422
Query 154386 GCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGA 154445
|| ||| |||||||| |||||| || | || || | ||| ||||||||||| ||
Sbjct 503423 GCAGATTCAATATCATCCTTGTGAATACCAACAGCAACCCTCATAAGCATGTGCTGAGGC 503482
Query 154446 CGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCG 154505
| || |||| | | || ||||||||| ||| |||| || |||||| ||||
Sbjct 503483 CTCTCCACGACCTTCCCCTGAACCTTCAAGAGGTATGACCTTTCCAGAGTTTTGAAACCA 503542
Query 154506 AAATACTTGTATTCAAAATCTAGCTCAT 154533
||||| | ||| ||||| || | ||||
Sbjct 503543 AAATAGTCGTAATCAAAGTCACGGTCAT 503570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496255874149440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |