Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq124 140 2e-28
seq14 120 2e-22
seq4 89.7 4e-13
seq21 82.4 5e-11
>seq124
Length=632428
Score = 140 bits (154), Expect = 2e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || || | | || || || || || || |||||||||||||||||||||
Sbjct 447695 CCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCC 447754
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| ||| ||||||| | || || |||||| | || | | ||| ||||| ||||
Sbjct 447755 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGA 447814
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|||||||||||||| ||||||| |||||| | || |||||||| | |||| ||
Sbjct 447815 ATTCCTTCCTTGTCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACC 447874
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | |||||| ||||| || || |||||||| ||||| || |||||
Sbjct 447875 TCAAGGGTAATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|||| |||||| || || || ||||| |||||||||||| ||| | | | |||||
Sbjct 447257 ACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGTCCATCTTCA 447316
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| || ||||| ||| | || | | || ||||| || || ||||||||||| |
Sbjct 447317 AGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGA 447376
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| || ||| ||| | || || || ||| |||| || || || || || || ||
Sbjct 447377 ATCTTAGCTTTGACATTGTCAATTGTGTCGGAGCTTTCAACCTCCAATGTGATAGTCTTT 447436
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || ||||| || |||||||||||
Sbjct 447437 CCCGTGAGCGTTTTGACGAAAATTTGCAT 447465
>seq14
Length=2855554
Score = 120 bits (132), Expect = 2e-22
Identities = 167/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008
||||| ||||||| | || ||||| || || || || ||||| ||||||||||| |||
Sbjct 999570 CCACCGCGCAATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 999511
Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068
| | |||| | ||||| | ||| ||||| ||| | ||||| | ||||||||| |||
Sbjct 999510 -AAAGTTCTGCCATCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGG 999452
Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|| || |||||||| ||| ||||| || ||| | || || |||||| | || |
Sbjct 999451 GATGCCCTCCTTGTCTTGAATCTTTGC-CTTCACATTATCAATGGTATCGGAGCTCTCCA 999393
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || || || || || || || |||| ||||| |||||||| |||||
Sbjct 999392 CTTCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344
Score = 98.7 bits (108), Expect = 7e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|| |||||||| | | || || || || || || || || ||||||||||||||
Sbjct 999342 CCGCCTCGCAACCGAAGCACCAAGTGCAGTGTCGATTCCTTCTGTATGTTGTAATCTGCC 999283
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | || | ||||||| ||| || ||||| | |||| | ||||||||| |||
Sbjct 999282 AGAGTCCTACCATCTTCTAGTTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCAGGTGGG 999223
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| || |||||||| || ||| ||| ||| | || || ||||| | || ||
Sbjct 999222 ATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTGTCAATGGTATCAGAGCTCTCCACT 999163
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || || ||||||| || || |||||||| |||||
Sbjct 999162 TCCAAAGTGATCGTCTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 999116
Score = 86.0 bits (94), Expect = 4e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| ||||| || ||||| || ||||||||||| | | ||| | | || || | ||||
Sbjct 999774 TGGAGGGTCGACTCTTTCTGAATGTTGTAATCCGCCAAAGTTCGCCCATCCTCCAGTTGT 999715
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092
|| ||||| | ||||| | |||||| || ||||| || |||||||| ||| |||
Sbjct 999714 TTCCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCTTGAATCTTT 999655
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
|| || || | || || || || |||| || || || || || || || |||||
Sbjct 999654 GC-CTTCACGTTGTCGATTGTGTCCGAGCTTTCGACCTCCAACGTGATCGTCTTCCCTGT 999596
Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176
||| || || ||||| || |||||
Sbjct 999595 CAGTGTCTTCACAAAGATCTGCAT 999572
>seq4
Length=5448771
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | ||||| || | || || || || || || || ||||||||||||
Sbjct 199547 CCACCACGGAGCCTTAACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCT 199606
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| ||| |||| || | || || ||||| | || | |||||| ||||| ||
Sbjct 199607 AGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGT 199666
Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
||||| |||||||| ||| ||||| || ||| | || || |||||| | || ||
Sbjct 199667 ATTCCCTCCTTGTCCTGAATCTTTGC-CTTCACATTGTCGATGGTATCGGAGCTCTCAAC 199725
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
|| | || ||||| || || |||| ||||| ||||| || ||||||||
Sbjct 199726 CTCGAGAGTTATGGTCTTCCCCGTCAACGTTTTCACAAAGATCTGCATATT 199776
>seq21
Length=2013095
Score = 82.4 bits (90), Expect = 5e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| || || | |||||| || || || ||||| || ||| ||| | || |||| ||
Sbjct 1809664 ACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTACCGTCCTCC 1809605
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| || || || ||| | |||| | ||| ||||| ||| ||||| || |||||
Sbjct 1809604 AGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGG 1809545
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| || |||||| | ||||| || || | | || || || | ||||||||||||
Sbjct 1809544 ATCTTAGCCTTTACATTGTCTATGGTGTCCGAACTCTCAACCTCCAGGGTAATGGTTTTC 1809485
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| |||| || || || ||||| ||||||
Sbjct 1809484 CCGGTCAACGTCTTGACGAAAATCTGCATA 1809455
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357387417787820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |