Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq14 123 2e-23 seq124 93.3 4e-14 seq60 91.5 1e-13 seq4 89.7 5e-13 >seq14 Length=2855554 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || || | ||| ||||| || || |||||||| |||||||| |||||| Sbjct 998661 ATCCCACCGCGAAGTCTAAGCACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCG 998602 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | ||| || | ||| || || ||| | || | | ||||||||| || Sbjct 998601 GCAAGGGTTCGACCATCCTCGAGTTGCTTACCAGCGAAGATAAGCCTTTGCTGGTCGGGA 998542 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || ||||||||||| || ||| || | || | ||| || ||| || Sbjct 998541 GGAATTCCCTCTTTATCTTGGATCTTTGCCTTTACATTGTCAATGGTATCCGAACTTTCC 998482 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | |||||||| || |||||||| || || ||||||||| Sbjct 998481 ACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTCACGAAGATTTGCATC 998431 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGT 45189 ||| | |||||| ||||||||||||||||| || ||||| ||| | ||| | ||| | Sbjct 999553 CACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT-AAAGTTCTGCCATCTT 999495 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | ||| || |||||| | ||||| | || ||||| || || ||||| || || |||| Sbjct 999494 CGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCTT 999435 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 |||| ||| || | || | ||| ||||| ||| ||||| | ||| | || | Sbjct 999434 GAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCCACTTCCAAAGTGATTGTCT 999375 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGC 45345 |||| || | ||||| |||||||| |||||| ||| Sbjct 999374 TGCCAGTCAAGGTTTTCACAAAAATCTGCATCCCGC 999339 >seq124 Length=632428 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || || || ||||| |||||||| ||| | || | || |||| ||| ||||| Sbjct 447041 GTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGTCTTCCAGTTGCTTTCCA 447100 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 ||| | |||| | |||||||| || || ||||| ||||||||||||||||| || Sbjct 447101 GCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCTTGAATTTTAGCCTTC 447160 Query 45264 ATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGT 45322 | || | || | ||| || ||| ||| || || ||||| | ||||| || |||| || Sbjct 447161 A-CGTTGTCGATGGTATCCGAACTCTCAACCTCCAGAGTGATTGTTTTTCCCGTTAAGGT 447219 Query 45323 TTTTACAAAAATTTGCAT 45340 || |||||||| ||||| Sbjct 447220 CTTCACAAAAATCTGCAT 447237 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| ||||| || | | ||||||||| || ||||| |||||||| || || |||||| Sbjct 447236 ATTCCACCGCGAAGACGGAGCACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATCG 447295 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | || || |||||| | || | | ||||||||| || Sbjct 447296 GCAAGAGTCCGTCCATCTTCAAGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGGA 447355 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || |||||||| || ||||| || | |||||||| || Sbjct 447356 GGGATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATTGTGTCGGAGCTTTCA 447415 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | || || || || || ||||| || ||||||||||| Sbjct 447416 ACCTCCAATGTGATAGTCTTTCCCGTGAGCGTTTTGACGAAAATTTGCAT 447465 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || ||||| || || ||||| || || |||||| | |||| || || | || Sbjct 447719 TGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCCAGGGTTCGGCCGTCTTCGAGCTGC 447778 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | || | | ||||||||||| ||||| ||||| || || |||||||| Sbjct 447779 TTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTGAATTTTG 447838 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | || | || || ||| || || || || |||| ||||||||||| Sbjct 447839 GCCTTTACATTGTCAATAGTATCAGAACTTTCAACCTCAAGGGTAATTGTTTTGCCGGTG 447898 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 |||||||| ||||| || |||||| Sbjct 447899 AGAGTTTTCACAAATATCTGCATC 447922 >seq60 Length=1131370 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | ||||||||| || || || || ||||| ||||||||||| ||||||| ||| Sbjct 437119 CCTCCCCTGAGCCTCAAGACCAGGTGAAGGGTTGACTCCTTTTGGATGTTATAAT--CTG 437176 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || || || ||| |||||||| || || || | || || | ||||||||| || | Sbjct 437177 CAAGTGTTCGACCATCATCCAATTGCTTACCAGCAAAAATTAACCTTTGCTGGTCAGGTG 437236 Query 45232 GAATGCCTTCTTTATC 45247 | || |||||||| || Sbjct 437237 GGATACCTTCTTTGTC 437252 >seq4 Length=5448771 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || |||||||| ||||| || || ||||| || ||||| ||||| || |||||| Sbjct 199547 CCACCACGGAGCCTTAACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCT 199606 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| || || | || || || || | || | || |||||||||||||| Sbjct 199607 AGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGT 199666 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || || || ||||| ||| || | || | ||| ||||| ||| || Sbjct 199667 ATTCCCTCCTTGTCCTGAATCTTTGCCTTCACATTGTCGATGGTATCGGAGCTCTCAACC 199726 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| | || || || || | ||||| ||||| || ||||| Sbjct 199727 TCGAGAGTTATGGTCTTCCCCGTCAACGTTTTCACAAAGATCTGCAT 199773 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| |||||||| | ||| || || || || || || || ||||| || || ||| Sbjct 205222 CCTCCACGGAGCCTTAGCACAAGGTGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCA 205281 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| |||| || || || || | || | || |||||||||||||| Sbjct 205282 AGAGTTCGACCATCCTCCAGCTGCTTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGGT 205341 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || || || ||||| || || | || | ||| || ||| |||||| Sbjct 205342 ATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCGATGGTATCAGAACTCTCGACC 205401 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| | || || || || || ||||| || || || ||||| Sbjct 205402 TCGAGAGTTATGGTCTTCCCTGTCAGCGTTTTCACGAAGATCTGCAT 205448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451997256157920