Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 104 3e-17 seq49 87.8 2e-12 >seq1 Length=7185522 Score = 104 bits (114), Expect = 3e-17 Identities = 257/382 (67%), Gaps = 10/382 (3%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTC---GCG 12848 ||||||||||||||||||||||| |||||||| ||||| || | || |||||| | Sbjct 6703820 AAGCCATCCATCTCAGTCAAGAGCTGATTGATCGTTTGCTCTCTCTCGTCATTCCCACCT 6703761 Query 12849 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | |||| || | || || ||| || || || ||||| || |||||||| || || Sbjct 6703760 CCAAGACCAGCCCCTCTCTGT--CTT-CCCACAGCATCAATCTCATCAATGAAGACAATG 6703704 Query 12909 CACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 || || | ||| || ||| || || | || | ||||||| ||||| ||||| Sbjct 6703703 CAAGG-GGCTTTGGACTTGGCCTTCTCGAACAAGTCCCTCACTCTCGAAGCACCCACACC 6703645 Query 12968 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACC 13027 |||||||| || ||||| | | ||| | ||| || ||| || || | || || Sbjct 6703644 CACAAACAGTTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCCTCTCC 6703585 Query 13028 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACC 13087 || | ||| ||||| || || ||||| || || || || || |||| ||| || Sbjct 6703584 GGCCACGGCCCGGGCCAGAAGAGTCTTTCCGGTACCAGGAGGTCCAACGAGGAGGCACCC 6703525 Query 13088 ACGTGGGATCCTGGCACCACTTCCAAAGTAGCGCTC-GGGTTGTTTAAGAAAGTCCACGA 13146 |||||| |||| ||| || ||| || ||||| || |||||| || || | Sbjct 6703524 TTTTGGGATTTTGGCTCCAAGAGCAGTGTACTTATCAGGGTTTTTCAAGAAA-TCGACCA 6703466 Query 13147 TTTCTTCCAATTCATCCTTCGC 13168 ||| | || |||| |||||| Sbjct 6703465 CTTCCTGCAGTTCAAGCTTCGC 6703444 >seq49 Length=1248075 Score = 87.8 bits (96), Expect = 2e-12 Identities = 239/360 (66%), Gaps = 12/360 (3%) Strand=Plus/Plus Query 12734 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAA 12793 |||||| || || | ||| || || || || |||| ||||| || | || || Sbjct 901120 GTCAAGAATGTCTGCCCTGTTTGTGGCAGCAATTACAATAATGCCAGTGTTTCCCTCAAA 901179 Query 12794 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCAT 12853 |||||||| ||||| | || || |||| ||| ||||| | |||||||||| | Sbjct 901180 CCCATCCATTTCAGTTAGAAGCTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCACC--- 901236 Query 12854 ACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910 |||| || | || | ||| || || || |||||||| |||| || || || || Sbjct 901237 ACCAATTCCAGTACCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAACACAATGCA 901296 Query 12911 CGGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 || |||||| ||| |||| |||| ||| || || | ||||| | ||| Sbjct 901297 AGGAGCATTTTCCTTGGC--CTTCTTGAAGAGATCACGAACACGAGAAGCACCAATACCG 901354 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACC 13027 ||||||||||| ||||| | || | ||| || | || || ||||| | |||||| Sbjct 901355 ACAAACATCTCAACAAACTCGGAACCTGAA-ATGGAGAAAAATGGGACACCTGCTTCACC 901413 Query 13028 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACC 13087 || ||||| ||| || || |||||||| || ||||| || ||||||| |||| Sbjct 901414 TGCAATGGCCTTGGCTAGCAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACC 901473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613499132380320