Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6 114 2e-20 >seq6 Length=5093711 Score = 114 bits (126), Expect = 2e-20 Identities = 477/744 (64%), Gaps = 28/744 (4%) Strand=Plus/Minus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||||||||| |||||||| || |||| || ||||| ||||||| | |||| |||| Sbjct 4852505 TCTTCTCGAAGAAGTTGGTTTTCCCCTGCAGCGATATCAATTCCATCCAATCGAACGGGT 4852446 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 ||| || | || ||| || || || ||||||||| ||| || || || | Sbjct 4852445 TCTGTACATTGTAAATCTTGCTGTGCCCTAGGGCTACCAGCAACCGGTCAGCAACGAACT 4852386 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCC 159826 ||||||| | |||| | || | ||| ||||||| || | | |||| || || || Sbjct 4852385 CGATGTACTCGCTCATCAGATCGCCGTTCATCCCCACCAACGCGCACGGC-AGTGCATCG 4852327 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTT--CGGTCACAATCTGCGAGACACGTTCGT 159884 ||| || ||| |||| || || ||||| | ||| || ||| | || |||| Sbjct 4852326 CACACGAATTCCCTCTCGATATCCACCGCCTGCCGG--ACGATCCCCTTCACTTTGTCGT 4852269 Query 159885 ACCCCGGCT---TGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCA 159941 | | | | | | || | || |||| | |||||| || |||||||||| Sbjct 4852268 CGCTCAGTTGATTCCTCATCAGAGAGT------ACAGCAAGCACGCGAAATCGCAGTGCA 4852215 Query 159942 GTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCG 160001 | || ||||| || ||||| || ||||| || | | | || ||||| | || || Sbjct 4852214 GGCCTTCGTCTCGGGAGATCAATTCGTTTGAGAATGTCAATCCTGGCATAAGGCCTCGTT 4852155 Query 160002 GTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCA 160060 || ||||| || |||| |||| || | | | | || || || || ||||| || Sbjct 4852154 TCTTCAGCCAGAATATGG-CGCAGAAACTTCCCGAGAAGAAAATACCTTCCACACATGCG 4852096 Query 160061 AACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCAT 160120 || | | || | ||| |||| || | || | | | | |||| || ||||| Sbjct 4852095 AAGCCAATCAGACGCTCTGCAAACGA---CTCGGAGCCGTCGATCCATTTTAGCGCCCAC 4852039 Query 160121 TCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCC 160180 || || ||||| |||| ||| || | ||||| ||||| ||||| |||| || ||| Sbjct 4852038 TCGGCTTTCTTCGCGACGCAAGGTACAGTCTCGATGGCGTGGAACAACCTGTTCTTCTCG 4851979 Query 160181 TTCACATCCTTGATCAGAGT----AGCAATCAGCTTCGAGTACATTTCTGCGTGCACATT 160236 |||||||| || ||||| | || |||||| || | ||| | || Sbjct 4851978 ACTGAGTCCTTGATGTAGGTTTCGAGCAACAAACT----GTACATCTCGGAGTGAATGTT 4851923 Query 160237 TTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGT 160296 || || || || || ||| ||||| | | |||||| | ||| ||||||| | Sbjct 4851922 CTCAATTGCGATTTGGAAGCCATAGAACGCTCTAGCCTCCGCAACCTGAACCTCCTTCAT 4851863 Query 160297 GAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACAC 160356 ||||| | ||||| | ||| | || |||| ||| || ||||| |||| || Sbjct 4851862 GAACCGGCCGGCGAGATTCTCCAGAACGATACCATCGGAGGCGGCGAAGAAGGCCAGAAC 4851803 Query 160357 GTGAGAGATGAAATGTCTCTCGTC 160380 ||| ||||||||||| | ||||| Sbjct 4851802 GTGGGAGATGAAATGCTTTTCGTC 4851779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795144743709120