Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq6 114 2e-20
>seq6
Length=5093711
Score = 114 bits (126), Expect = 2e-20
Identities = 477/744 (64%), Gaps = 28/744 (4%)
Strand=Plus/Minus
Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707
|||||||||| |||||||| || |||| || ||||| ||||||| | |||| ||||
Sbjct 4852505 TCTTCTCGAAGAAGTTGGTTTTCCCCTGCAGCGATATCAATTCCATCCAATCGAACGGGT 4852446
Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767
||| || | || ||| || || || ||||||||| ||| || || || |
Sbjct 4852445 TCTGTACATTGTAAATCTTGCTGTGCCCTAGGGCTACCAGCAACCGGTCAGCAACGAACT 4852386
Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCC 159826
||||||| | |||| | || | ||| ||||||| || | | |||| || || ||
Sbjct 4852385 CGATGTACTCGCTCATCAGATCGCCGTTCATCCCCACCAACGCGCACGGC-AGTGCATCG 4852327
Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTT--CGGTCACAATCTGCGAGACACGTTCGT 159884
||| || ||| |||| || || ||||| | ||| || ||| | || ||||
Sbjct 4852326 CACACGAATTCCCTCTCGATATCCACCGCCTGCCGG--ACGATCCCCTTCACTTTGTCGT 4852269
Query 159885 ACCCCGGCT---TGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCA 159941
| | | | | | || | || |||| | |||||| || ||||||||||
Sbjct 4852268 CGCTCAGTTGATTCCTCATCAGAGAGT------ACAGCAAGCACGCGAAATCGCAGTGCA 4852215
Query 159942 GTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCG 160001
| || ||||| || ||||| || ||||| || | | | || ||||| | || ||
Sbjct 4852214 GGCCTTCGTCTCGGGAGATCAATTCGTTTGAGAATGTCAATCCTGGCATAAGGCCTCGTT 4852155
Query 160002 GTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCA 160060
|| ||||| || |||| |||| || | | | | || || || || ||||| ||
Sbjct 4852154 TCTTCAGCCAGAATATGG-CGCAGAAACTTCCCGAGAAGAAAATACCTTCCACACATGCG 4852096
Query 160061 AACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCAT 160120
|| | | || | ||| |||| || | || | | | | |||| || |||||
Sbjct 4852095 AAGCCAATCAGACGCTCTGCAAACGA---CTCGGAGCCGTCGATCCATTTTAGCGCCCAC 4852039
Query 160121 TCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCC 160180
|| || ||||| |||| ||| || | ||||| ||||| ||||| |||| || |||
Sbjct 4852038 TCGGCTTTCTTCGCGACGCAAGGTACAGTCTCGATGGCGTGGAACAACCTGTTCTTCTCG 4851979
Query 160181 TTCACATCCTTGATCAGAGT----AGCAATCAGCTTCGAGTACATTTCTGCGTGCACATT 160236
|||||||| || ||||| | || |||||| || | ||| | ||
Sbjct 4851978 ACTGAGTCCTTGATGTAGGTTTCGAGCAACAAACT----GTACATCTCGGAGTGAATGTT 4851923
Query 160237 TTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGT 160296
|| || || || || ||| ||||| | | |||||| | ||| ||||||| |
Sbjct 4851922 CTCAATTGCGATTTGGAAGCCATAGAACGCTCTAGCCTCCGCAACCTGAACCTCCTTCAT 4851863
Query 160297 GAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACAC 160356
||||| | ||||| | ||| | || |||| ||| || ||||| |||| ||
Sbjct 4851862 GAACCGGCCGGCGAGATTCTCCAGAACGATACCATCGGAGGCGGCGAAGAAGGCCAGAAC 4851803
Query 160357 GTGAGAGATGAAATGTCTCTCGTC 160380
||| ||||||||||| | |||||
Sbjct 4851802 GTGGGAGATGAAATGCTTTTCGTC 4851779
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795144743709120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |