Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq124 104 3e-17
seq4 98.7 1e-15
seq14 95.1 1e-14
seq21 82.4 9e-11
>seq124
Length=632428
Score = 104 bits (114), Expect = 3e-17
Identities = 155/219 (71%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||||| ||||||||| ||||| || ||||||||||| | |||||||| |
Sbjct 447478 ACGAAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCAGCCAGAGTGCGGCC 447537
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| ||||| || || || ||||| |||| | ||||||||| | || | | ||| ||
Sbjct 447538 ATCTTCGAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATACCCTCTTT 447597
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554
|| |||||| ||| | | | | || || ||| |||||| |||| ||
Sbjct 447598 ATCTTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGCT---TTCCACCTCCAAGGT 447654
Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||||||| || || || ||||| || |||||||||||
Sbjct 447655 GATGGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693
Score = 89.7 bits (98), Expect = 6e-13
Identities = 150/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||| ||||| | || ||||||||| || ||||| |||| ||||| || |
Sbjct 447250 ACGGAGCACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGTCC 447309
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || ||||||||||| ||||| || | | |||||||| | || | | |||||
Sbjct 447310 ATCTTCAAGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGGAGGGATACCTTCCTT 447369
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
||| ||||| |||| | | | |||||| ||| || |||| |||||
Sbjct 447370 GTCTTGAATCTTAGCTTTGACATTGTCAATTGTGTCGGAGCTTTCAACCTCCAATGTGAT 447429
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| || ||||| |||||||| || || |||||||||
Sbjct 447430 AGTCTTTCCCGTGAGCGTTTTGACGAAAATTTGCATT 447466
>seq4
Length=5448771
Score = 98.7 bits (108), Expect = 1e-15
Identities = 142/199 (71%), Gaps = 6/199 (3%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| |||| ||| || || |||| || |||||||| || || ||
Sbjct 199582 CTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAA 199641
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| | ||| | | |||||||||| ||||| ||| | |
Sbjct 199642 GATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGAATCTTTGCCTTCACATT 199701
Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | || || |||| || || || | || ||||| || ||||||| ||||||
Sbjct 199702 GTCGATGGTATCGGAGCTC---TCAACCTCGAGAGTTATGGTCTTCCCCGTCAACGTTTT 199758
Query 46579 AACAAAGATTTGCATTTTG 46597
|||||||| ||||| |||
Sbjct 199759 CACAAAGATCTGCATATTG 199777
>seq14
Length=2855554
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| |||||| ||| || || |||||||||||||| | ||||| || |||| ||
Sbjct 998869 CACCAAATGCAAAGTAGATTCTTTCTGGATATTGTAGTCAGCAAGAGTACGGCCGTCCTC 998810
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
|||||||| || || || |||| | ||| || || | || | | |||||| ||
Sbjct 998809 AAGCTGCTTACCAGCAAAAATCAGCCTCTGTTGATCAGGAGGGATACCCTCCTTATCTTG 998750
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||| || ||| | | | | ||| || |||||| || | ||||||||||||
Sbjct 998749 GATTTTAGCCTTCACATTGTCAATCGTATCAGAACTTTCCACCTCAAGCGTGATGGTTTT 998690
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || || || || ||||| ||||||||
Sbjct 998689 GCCAGTAAGGGTCTTCACAAATATTTGCAT 998660
Score = 93.3 bits (102), Expect = 5e-14
Identities = 154/221 (70%), Gaps = 6/221 (3%)
Strand=Plus/Minus
Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435
|| || | ||||| ||||| || ||||||||||| ||||| || | || ||| |
Sbjct 999561 AATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCTAAAGTTCTG 999502
Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495
| || ||||| |||||||| ||||| ||||| | ||| ||||| | || | || ||||
Sbjct 999501 CCATCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGGATGCCCTCC 999442
Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACC 46552
||||| ||||| ||| | | | | || || |||| ||||| ||||
Sbjct 999441 TTGTCTTGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTC---TCCACTTCCAAA 999385
Query 46553 GTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||| || ||||| |||| ||||| ||||| || |||||
Sbjct 999384 GTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344
Score = 87.8 bits (96), Expect = 2e-12
Identities = 148/213 (69%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||||||| | ||| ||||| ||||||||||| |||| || || || | || ||
Sbjct 998641 CACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGACCATCCTC 998582
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
||| ||||| || ||||| || | | |||||||||| || | | ||| || ||
Sbjct 998581 GAGTTGCTTACCAGCGAAGATAAGCCTTTGCTGGTCGGGAGGAATTCCCTCTTTATCTTG 998522
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA---TTCCACATCCACCGTGATGGT 46560
|||||| ||| | | | | || || ||| |||||| || | ||||| ||
Sbjct 998521 GATCTTTGCCTTTACATTGTCAATGGTATC---CGAACTTTCCACCTCGAGGGTGATTGT 998465
Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||||| || || ||||| || |||||||||||
Sbjct 998464 TTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 998432
>seq21
Length=2013095
Score = 82.4 bits (90), Expect = 9e-11
Identities = 138/196 (70%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || |||||||| || | ||||| | | || || |||||||| || |||||
Sbjct 1809875 CTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTGCTTCCCTGCGAA 1809816
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| | ||||| || | || | | |||||||||| ||| || ||| | |
Sbjct 1809815 AATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCC-TGAATTTTGGCTTTCACAT 1809757
Query 46522 CGCCACCG-TGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577
| || | ||||| ||| ||||| |||| |||||||| || || |||| ||||
Sbjct 1809756 TGTCAATGGTGTCGGAGCTC---TCCACCTCCAGAGTGATGGTCTTCCCAGTCAAGGTTT 1809700
Query 46578 TAACAAAGATTTGCAT 46593
| ||||||||||||||
Sbjct 1809699 TCACAAAGATTTGCAT 1809684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565230967115040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |