Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq124 104 3e-17 seq4 98.7 1e-15 seq14 95.1 1e-14 seq21 82.4 9e-11 >seq124 Length=632428 Score = 104 bits (114), Expect = 3e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| ||||||||| ||||| || ||||||||||| | |||||||| | Sbjct 447478 ACGAAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCAGCCAGAGTGCGGCC 447537 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || ||||| || || || ||||| |||| | ||||||||| | || | | ||| || Sbjct 447538 ATCTTCGAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATACCCTCTTT 447597 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 || |||||| ||| | | | | || || ||| |||||| |||| || Sbjct 447598 ATCTTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGCT---TTCCACCTCCAAGGT 447654 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||||| || || || ||||| || ||||||||||| Sbjct 447655 GATGGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693 Score = 89.7 bits (98), Expect = 6e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | || ||||||||| || ||||| |||| ||||| || | Sbjct 447250 ACGGAGCACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGTCC 447309 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||| ||||| || | | |||||||| | || | | ||||| Sbjct 447310 ATCTTCAAGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGGAGGGATACCTTCCTT 447369 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||| |||| | | | |||||| ||| || |||| ||||| Sbjct 447370 GTCTTGAATCTTAGCTTTGACATTGTCAATTGTGTCGGAGCTTTCAACCTCCAATGTGAT 447429 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || ||||| |||||||| || || ||||||||| Sbjct 447430 AGTCTTTCCCGTGAGCGTTTTGACGAAAATTTGCATT 447466 >seq4 Length=5448771 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| |||| ||| || || |||| || |||||||| || || || Sbjct 199582 CTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAA 199641 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | ||| | | |||||||||| ||||| ||| | | Sbjct 199642 GATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGAATCTTTGCCTTCACATT 199701 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | || || |||| || || || | || ||||| || ||||||| |||||| Sbjct 199702 GTCGATGGTATCGGAGCTC---TCAACCTCGAGAGTTATGGTCTTCCCCGTCAACGTTTT 199758 Query 46579 AACAAAGATTTGCATTTTG 46597 |||||||| ||||| ||| Sbjct 199759 CACAAAGATCTGCATATTG 199777 >seq14 Length=2855554 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||||| ||| || || |||||||||||||| | ||||| || |||| || Sbjct 998869 CACCAAATGCAAAGTAGATTCTTTCTGGATATTGTAGTCAGCAAGAGTACGGCCGTCCTC 998810 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||| || || || |||| | ||| || || | || | | |||||| || Sbjct 998809 AAGCTGCTTACCAGCAAAAATCAGCCTCTGTTGATCAGGAGGGATACCCTCCTTATCTTG 998750 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||| || ||| | | | | ||| || |||||| || | |||||||||||| Sbjct 998749 GATTTTAGCCTTCACATTGTCAATCGTATCAGAACTTTCCACCTCAAGCGTGATGGTTTT 998690 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || || ||||| |||||||| Sbjct 998689 GCCAGTAAGGGTCTTCACAAATATTTGCAT 998660 Score = 93.3 bits (102), Expect = 5e-14 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 || || | ||||| ||||| || ||||||||||| ||||| || | || ||| | Sbjct 999561 AATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCTAAAGTTCTG 999502 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 | || ||||| |||||||| ||||| ||||| | ||| ||||| | || | || |||| Sbjct 999501 CCATCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGGATGCCCTCC 999442 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACC 46552 ||||| ||||| ||| | | | | || || |||| ||||| |||| Sbjct 999441 TTGTCTTGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTC---TCCACTTCCAAA 999385 Query 46553 GTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || ||||| |||| ||||| ||||| || ||||| Sbjct 999384 GTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | ||| ||||| ||||||||||| |||| || || || | || || Sbjct 998641 CACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGACCATCCTC 998582 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||| ||||| || ||||| || | | |||||||||| || | | ||| || || Sbjct 998581 GAGTTGCTTACCAGCGAAGATAAGCCTTTGCTGGTCGGGAGGAATTCCCTCTTTATCTTG 998522 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA---TTCCACATCCACCGTGATGGT 46560 |||||| ||| | | | | || || ||| |||||| || | ||||| || Sbjct 998521 GATCTTTGCCTTTACATTGTCAATGGTATC---CGAACTTTCCACCTCGAGGGTGATTGT 998465 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || || ||||| || ||||||||||| Sbjct 998464 TTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 998432 >seq21 Length=2013095 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || |||||||| || | ||||| | | || || |||||||| || ||||| Sbjct 1809875 CTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTGCTTCCCTGCGAA 1809816 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||| || | || | | |||||||||| ||| || ||| | | Sbjct 1809815 AATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCC-TGAATTTTGGCTTTCACAT 1809757 Query 46522 CGCCACCG-TGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | || | ||||| ||| ||||| |||| |||||||| || || |||| |||| Sbjct 1809756 TGTCAATGGTGTCGGAGCTC---TCCACCTCCAGAGTGATGGTCTTCCCAGTCAAGGTTT 1809700 Query 46578 TAACAAAGATTTGCAT 46593 | |||||||||||||| Sbjct 1809699 TCACAAAGATTTGCAT 1809684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565230967115040