Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq124 96.9 2e-15 seq14 82.4 5e-11 >seq124 Length=632428 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 39506 GCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCAT 39565 |||||||||||||| |||| |||||||| |||||||| ||||||||| | | | Sbjct 447024 GCAGTACCAAATGCGAAGTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGT 447083 Query 39566 CGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGT 39625 | |||| ||| || || | ||||| | | |||||| || | || | ||| ||||| | Sbjct 447084 CTTCCAGTTGCTTTCCAGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTAT 447143 Query 39626 CGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 | ||||| || | ||| | | | || || | || || || |||| ||| ||| Sbjct 447144 CTTGAATTTTAGCCTTCA-CGTTGTCGATGGTATCCGAACTCTCAACCTCCAGAGTGATT 447202 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| |||||||| || || || || |||||||| Sbjct 447203 GTTTTTCCCGTTAAGGTCTTCACAAAAATCTGCAT 447237 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||||||||||||||||||| |||||||| || ||||| |||||| Sbjct 354486 CCACCACGAAGACGCAGTACCAAATGCAAAGTCGACTCTTTTTGAATGTTATAGTCGGCC 354427 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | | | |||| ||| || || | ||||| || | |||||| || | || Sbjct 354426 AAAGTCCTGCCGTGTTCCAGTTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGTGGG 354367 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||| ||||| | | | | || | || | || |||| | || || | ||||||| Sbjct 354366 ATGCCCTCTTTTT--CTTGATCTTGGCYTTCACATTGTCG--ATGGTATCAGAGCTTTCC 354311 Query 39670 A-CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | | ||||| || || ||||| || || | ||||| |||||||| ||||| Sbjct 354310 ACCCTCCAAGGTGATGGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 354260 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||||||||| || ||| || || ||||| || || ||| Sbjct 447467 CCCCCACGAAGACGAAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCAGCC 447526 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| || | |||||| || | ||||| | | |||||| |||| || Sbjct 447527 AGAGTGCGGCCATCTTCGAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGA 447586 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | || ||||| || | || || | || |||| | || || | |||||||| Sbjct 447587 ATACCCTCTTTATCTTGGATCTTGGCCTTCACATTGTCG--ATGGTATCAGAGCTTTCCA 447644 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| || || ||||| || || | ||||| |||||||| ||||| Sbjct 447645 CCTCCAAGGTGATGGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/235 (69%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || ||||| || ||||| || | ||| ||||||||||| || |||| Sbjct 447691 CATC-CCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAAT 447749 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||||| || | || || | || || || | || |||| | |||||| |||| Sbjct 447750 CGGCCAGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCG 447809 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGC 39664 || | ||||| ||||| | | |||| | |||| || ||| || || || | | Sbjct 447810 GTGGAATTCCTTCCTTGTC-CTGAATTTTGGCCTTTACATTGTCAATA--GTATCAGAAC 447866 Query 39665 TTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| || || | ||||||||||| || || | |||||| || || |||||||| Sbjct 447867 TTTCAACCTCAAGGGTAATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921 >seq14 Length=2855554 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || || ||||| |||||| || |||| |||| ||||||||| |||| Sbjct 999762 TCTTTCTGAATGTTGTAATCCGCCAAAGTTCGCCCATCCTCCAGTTGTTTCCCAGCAAAG 999703 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || || | ||| ||||| | || | || || ||||| || ||| || | ||| Sbjct 999702 ATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCTTGAATCTTTGCCTTCA-CGTT 999644 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | |||||| | |||||| || ||||| || || || || || || | || || || Sbjct 999643 GTCGATTGTGTCCGAGCTTTCGACCTCCAACGTGATCGTCTTCCCTGTCAGTGTCTTCAC 999584 Query 39708 GAAGATCTGCAT 39719 ||||||||||| Sbjct 999583 AAAGATCTGCAT 999572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347365146287516