Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq49 134 2e-26
seq1 131 2e-25
seq60 100 4e-16
>seq49
Length=1248075
Score = 134 bits (148), Expect = 2e-26
Identities = 289/424 (68%), Gaps = 16/424 (4%)
Strand=Plus/Plus
Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975
||||| || || | | || || || || || |||| ||| || |||||| | |||
Sbjct 901121 TCAAGAATGTCTGCCCTGTTTGTGGCAGCAATTACAATAATGCCAGTGTTTCCCT--CAA 901178
Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035
| |||||||| || || | ||||||||| | || ||||| | |||||||||| |
Sbjct 901179 ACCCATCCATTTCAGTTAGAAGCTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCACC-- 901236
Query 16036 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092
|||| |||| || | ||| ||| || |||||||| ||||||| || || ||||
Sbjct 901237 -ACCAATTCCAGTACCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAACACAATGC 901295
Query 16093 ATGGTTGATTTTCGCGAGCGACTTCA--AAGAGATCCCGTACACGCTTGGCGCCCACACC 16150
| || |||||| || |||| |||||||| || ||||| || || | |||
Sbjct 901296 AAGGAGCATTTTCCTTGGC--CTTCTTGAAGAGATCACGAACACGAGAAGCACCAATACC 901353
Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 16209
||||||||||| ||||| | | | ||| || | || || |||||| | |||||
Sbjct 901354 GACAAACATCTCAACAAACTCGGAACCTGAA-ATGGAGAAAAATGGGACACCTGCTTCAC 901412
Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269
| |||||||| ||| || |||||||| || || ||||| ||| |||| || |||
Sbjct 901413 CTGCAATGGCCTTGGCTAGCAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACAC 901472
Query 16270 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329
|| ||||| || ||| || | | |||||||| | ||| ||||| ||||| |
Sbjct 901473 CTTTGGGAATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTTAGAAACTCCACCA 901532
Query 16330 TCTC 16333
|||
Sbjct 901533 CCTC 901536
>seq1
Length=7185522
Score = 131 bits (144), Expect = 2e-25
Identities = 221/318 (69%), Gaps = 4/318 (1%)
Strand=Plus/Minus
Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033
||| ||||||||||| ||||| ||||| || || ||||| || | || |||||| |
Sbjct 6703821 AAAGCCATCCATCTCAGTCAAGAGCTGATTGATCGTTTGCTCTCTCTCGTCATTCCCACC 6703762
Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093
| |||||| | | || ||||||| ||||||||||||||||||||||| |||||
Sbjct 6703761 TCCAAGACCAGCCCCTCTCTGTCTTCCCACAGCATCAATCTCATCAATGAAGACAATGCA 6703702
Query 16094 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151
|| | ||| | | || || || | |||| || | | || ||||||||
Sbjct 6703701 AGG--GGCTTTGGACTTGGCCTTCTCGAACAAGTCCCTCACTCTCGAAGCACCCACACCC 6703644
Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 16211
||||||| || ||||| | || ||| | ||| || ||| || ||| || || ||
Sbjct 6703643 ACAAACAGTTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCCTCTCCG 6703584
Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271
|| | ||| ||||| ||||||||||| || ||||| || || |||||||| |||
Sbjct 6703583 GCCACGGCCCGGGCCAGAAGAGTCTTTCCGGTACCAGGAGGTCCAACGAGGAGGCACCCT 6703524
Query 16272 CGTGGAATCTTGGCGCCA 16289
||| || ||||| |||
Sbjct 6703523 TTTGGGATTTTGGCTCCA 6703506
>seq60
Length=1131370
Score = 100 bits (110), Expect = 4e-16
Identities = 279/422 (66%), Gaps = 12/422 (3%)
Strand=Plus/Plus
Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977
|| || ||||| | | || || || || || |||| ||||| || | || |||
Sbjct 1083035 TCGAGAATATCTGCCCTGTTGGTGGCAGCAATTACAATGATACCGGTATTACCCTCGAAA 1083094
Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037
|||||||| || || ||||| ||||| | || ||||| | |||||||||| || |
Sbjct 1083095 CCATCCATTTCGGTTAAAAGTTGGTTGAGTGTCTGTTCTCTTTCATCATTCCCT---CCA 1083151
Query 16038 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094
||| ||||| | | ||| || || |||||||| ||||||| || || |||||
Sbjct 1083152 CCAATCCCAGCTCCTCTTTGTCGCCCGACCGCATCAATTTCATCAACAAACACAATGCAA 1083211
Query 16095 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152
|| ||| || || |||| || || || || || || || || |||||||
Sbjct 1083212 GGAGCATTCTCTTTGGC--CTTCTTGAATAGGTCGCGAACTCGAGATGCACCAACACCAA 1083269
Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 16211
|||||||||| ||||| | | | | | || | || || || ||| || ||||||
Sbjct 1083270 CAAACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCAGCTTCACCA 1083328
Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271
||||| ||| || || ||||||||||| || || || ||| || || |||||
Sbjct 1083329 GCAATTGCTTTTGCCAGCAGAGTCTTACCAGTTCCAGGAGGACCAATAAGAAGAACACCT 1083388
Query 16272 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATC 16331
|||||| || ||| | || | |||||||| | ||| | ||| || || | |
Sbjct 1083389 TTAGGAATCCGAGCTCCAACTGCAGTAAACCTCTCAGGCTTCTTCAAAAACTCTACGACC 1083448
Query 16332 TC 16333
||
Sbjct 1083449 TC 1083450
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620734237237440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |