Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq49 134 2e-26 seq1 131 2e-25 seq60 100 4e-16 >seq49 Length=1248075 Score = 134 bits (148), Expect = 2e-26 Identities = 289/424 (68%), Gaps = 16/424 (4%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| || || | | || || || || || |||| ||| || |||||| | ||| Sbjct 901121 TCAAGAATGTCTGCCCTGTTTGTGGCAGCAATTACAATAATGCCAGTGTTTCCCT--CAA 901178 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 | |||||||| || || | ||||||||| | || ||||| | |||||||||| | Sbjct 901179 ACCCATCCATTTCAGTTAGAAGCTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCACC-- 901236 Query 16036 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 |||| |||| || | ||| ||| || |||||||| ||||||| || || |||| Sbjct 901237 -ACCAATTCCAGTACCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAACACAATGC 901295 Query 16093 ATGGTTGATTTTCGCGAGCGACTTCA--AAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 | || |||||| || |||| |||||||| || ||||| || || | ||| Sbjct 901296 AAGGAGCATTTTCCTTGGC--CTTCTTGAAGAGATCACGAACACGAGAAGCACCAATACC 901353 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 16209 ||||||||||| ||||| | | | ||| || | || || |||||| | ||||| Sbjct 901354 GACAAACATCTCAACAAACTCGGAACCTGAA-ATGGAGAAAAATGGGACACCTGCTTCAC 901412 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269 | |||||||| ||| || |||||||| || || ||||| ||| |||| || ||| Sbjct 901413 CTGCAATGGCCTTGGCTAGCAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACAC 901472 Query 16270 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329 || ||||| || ||| || | | |||||||| | ||| ||||| ||||| | Sbjct 901473 CTTTGGGAATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTTAGAAACTCCACCA 901532 Query 16330 TCTC 16333 ||| Sbjct 901533 CCTC 901536 >seq1 Length=7185522 Score = 131 bits (144), Expect = 2e-25 Identities = 221/318 (69%), Gaps = 4/318 (1%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| ||||| || || ||||| || | || |||||| | Sbjct 6703821 AAAGCCATCCATCTCAGTCAAGAGCTGATTGATCGTTTGCTCTCTCTCGTCATTCCCACC 6703762 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | |||||| | | || ||||||| ||||||||||||||||||||||| ||||| Sbjct 6703761 TCCAAGACCAGCCCCTCTCTGTCTTCCCACAGCATCAATCTCATCAATGAAGACAATGCA 6703702 Query 16094 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 || | ||| | | || || || | |||| || | | || |||||||| Sbjct 6703701 AGG--GGCTTTGGACTTGGCCTTCTCGAACAAGTCCCTCACTCTCGAAGCACCCACACCC 6703644 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 16211 ||||||| || ||||| | || ||| | ||| || ||| || ||| || || || Sbjct 6703643 ACAAACAGTTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCCTCTCCG 6703584 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271 || | ||| ||||| ||||||||||| || ||||| || || |||||||| ||| Sbjct 6703583 GCCACGGCCCGGGCCAGAAGAGTCTTTCCGGTACCAGGAGGTCCAACGAGGAGGCACCCT 6703524 Query 16272 CGTGGAATCTTGGCGCCA 16289 ||| || ||||| ||| Sbjct 6703523 TTTGGGATTTTGGCTCCA 6703506 >seq60 Length=1131370 Score = 100 bits (110), Expect = 4e-16 Identities = 279/422 (66%), Gaps = 12/422 (3%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977 || || ||||| | | || || || || || |||| ||||| || | || ||| Sbjct 1083035 TCGAGAATATCTGCCCTGTTGGTGGCAGCAATTACAATGATACCGGTATTACCCTCGAAA 1083094 Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037 |||||||| || || ||||| ||||| | || ||||| | |||||||||| || | Sbjct 1083095 CCATCCATTTCGGTTAAAAGTTGGTTGAGTGTCTGTTCTCTTTCATCATTCCCT---CCA 1083151 Query 16038 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 ||| ||||| | | ||| || || |||||||| ||||||| || || ||||| Sbjct 1083152 CCAATCCCAGCTCCTCTTTGTCGCCCGACCGCATCAATTTCATCAACAAACACAATGCAA 1083211 Query 16095 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152 || ||| || || |||| || || || || || || || || ||||||| Sbjct 1083212 GGAGCATTCTCTTTGGC--CTTCTTGAATAGGTCGCGAACTCGAGATGCACCAACACCAA 1083269 Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 16211 |||||||||| ||||| | | | | | || | || || || ||| || |||||| Sbjct 1083270 CAAACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCAGCTTCACCA 1083328 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271 ||||| ||| || || ||||||||||| || || || ||| || || ||||| Sbjct 1083329 GCAATTGCTTTTGCCAGCAGAGTCTTACCAGTTCCAGGAGGACCAATAAGAAGAACACCT 1083388 Query 16272 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATC 16331 |||||| || ||| | || | |||||||| | ||| | ||| || || | | Sbjct 1083389 TTAGGAATCCGAGCTCCAACTGCAGTAAACCTCTCAGGCTTCTTCAAAAACTCTACGACC 1083448 Query 16332 TC 16333 || Sbjct 1083449 TC 1083450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620734237237440