Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 6e-13 >seq1 Length=7185522 Score = 89.7 bits (98), Expect = 6e-13 Identities = 245/370 (66%), Gaps = 4/370 (1%) Strand=Plus/Minus Query 11593 AAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGC 11652 || || ||||| || || | ||||| |||||||| || || | ||| || || Sbjct 6703820 AAGCCATCCATCTCAGTCAAGAGCTGATTGATCGTTTGCTCTCTCTCGTCATTCCCACCT 6703761 Query 11653 ATACCACCTGCCGAACGCT-TCTTACCGACAGCGTCAATCTCATCGATGAATACGATACA 11711 | ||| ||| | || |||| || ||||| ||||||||||| ||||| || || || Sbjct 6703760 CCAAGACCAGCCCCTCTCTGTCTTCCC-ACAGCATCAATCTCATCAATGAAGACAATGCA 6703702 Query 11712 CGGTTGGTTGGCACGT-GCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTA 11770 || | || | || | |||| ||||| | || | || | | || || ||||| | Sbjct 6703701 AGG-GGCTTTGGACTTGGCCTTCTCGAACAAGTCCCTCACTCTCGAAGCACCCACACCCA 6703643 Query 11771 CGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAG 11830 | |||| || || || | || ||||| |||| | ||| || ||| || ||| || | Sbjct 6703642 CAAACAGTTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCCTCTCCGG 6703583 Query 11831 CGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCAC 11890 | | ||| || || || |||||||| || |||||||| | ||| |||| ||| || Sbjct 6703582 CCACGGCCCGGGCCAGAAGAGTCTTTCCGGTACCAGGAGGTCCAACGAGGAGGCACCCTT 6703523 Query 11891 GGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCT 11950 ||||| ||||| ||| || ||| ||||| || || | ||| || || | | Sbjct 6703522 TTGGGATTTTGGCTCCAAGAGCAGTGTACTTATCAGGGTTTTTCAAGAAATCGACCACTT 6703463 Query 11951 CCTCAAGTTC 11960 ||| ||||| Sbjct 6703462 CCTGCAGTTC 6703453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588968254965600