Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq49 127 2e-24
seq1 127 2e-24
seq60 118 1e-21
seq11 93.3 5e-14
seq5 84.2 3e-11
>seq49
Length=1248075
Score = 127 bits (140), Expect = 2e-24
Identities = 285/422 (68%), Gaps = 12/422 (3%)
Strand=Plus/Plus
Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9282
||||| || || | | || || || || || |||| ||| || |||||| | |||
Sbjct 901121 TCAAGAATGTCTGCCCTGTTTGTGGCAGCAATTACAATAATGCCAGTGTTTCCCT--CAA 901178
Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342
| |||||||| || || | ||| ||||| | || ||||| | |||||||||| |
Sbjct 901179 ACCCATCCATTTCAGTTAGAAGCTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCACC-- 901236
Query 9343 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399
|||| |||| || | ||| ||| || |||||||| ||||||| || ||||| |
Sbjct 901237 -ACCAATTCCAGTACCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAACACAATGC 901295
Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459
| || |||||| ||| | | |||||||| ||||| | || || | ||| |
Sbjct 901296 AAGGAGCATTTTCCTTGGCCTTCTTGAAGAGATCACGAACACGAGAAGCACCAATACCGA 901355
Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9518
|||||||||| ||||| | | | ||| || | || || |||||| | ||||||
Sbjct 901356 CAAACATCTCAACAAACTCGGAACCTGAA-ATGGAGAAAAATGGGACACCTGCTTCACCT 901414
Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578
|||||||| ||| || |||||||| || || ||||| ||| |||| || ||||
Sbjct 901415 GCAATGGCCTTGGCTAGCAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCT 901474
Query 9579 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATC 9638
||||| || ||| || | | |||||||| | ||| ||||| ||||| | |
Sbjct 901475 TTGGGAATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTTAGAAACTCCACCACC 901534
Query 9639 TC 9640
||
Sbjct 901535 TC 901536
>seq1
Length=7185522
Score = 127 bits (140), Expect = 2e-24
Identities = 222/318 (70%), Gaps = 4/318 (1%)
Strand=Plus/Minus
Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340
||| ||||||||||| ||||| || || || || ||||| || | || |||||| |
Sbjct 6703821 AAAGCCATCCATCTCAGTCAAGAGCTGATTGATCGTTTGCTCTCTCTCGTCATTCCCACC 6703762
Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400
| |||||| | | || ||||||| |||||||||||||||||||||||||| ||
Sbjct 6703761 TCCAAGACCAGCCCCTCTCTGTCTTCCCACAGCATCAATCTCATCAATGAAGACAATGCA 6703702
Query 9401 TGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459
|| | ||| | ||| | || || | || | || || || |||||||| |
Sbjct 6703701 AGG-GGCTTTGGACTTGGCCTTCTCGAACAAGTCCCTCACTCTCGAAGCACCCACACCCA 6703643
Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519
|||||| || ||||| | || ||| | ||| || ||| || ||| || || || |
Sbjct 6703642 CAAACAGTTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCCTCTCCGG 6703583
Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC- 9578
| | ||| ||||| ||||||||||| || ||||| || || |||||| |||||||
Sbjct 6703582 CCACGGCCCGGGCCAGAAGAGTCTTTCCGGTACCAGGAGGTCCAACGAGGA-GGCACCCT 6703524
Query 9579 CGTGGAATCTTGGCGCCA 9596
||| || ||||| |||
Sbjct 6703523 TTTGGGATTTTGGCTCCA 6703506
>seq60
Length=1131370
Score = 118 bits (130), Expect = 1e-21
Identities = 230/336 (68%), Gaps = 8/336 (2%)
Strand=Plus/Plus
Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284
|| || ||||| | | || || || || || |||| ||||| || | | || |||
Sbjct 1083035 TCGAGAATATCTGCCCTGTTGGTGGCAGCAATTACAATGATACCGGTATTACCCTCGAAA 1083094
Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344
|||||||| || || ||||||||||| | || ||||| | |||||||||| || |
Sbjct 1083095 CCATCCATTTCGGTTAAAAGTTGGTTGAGTGTCTGTTCTCTTTCATCATTCCCT---CCA 1083151
Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401
||| ||||| | | ||| || || |||||||| ||||||| || ||||| ||
Sbjct 1083152 CCAATCCCAGCTCCTCTTTGTCGCCCGACCGCATCAATTTCATCAACAAACACAATGCAA 1083211
Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461
|| ||| || ||| | | || || |||||||| | || || |||||||||
Sbjct 1083212 GGAGCATTCTCTTTGGCCTTCTTGAATAGGTCGCGAACTCGAGATGCACCAACACCAACA 1083271
Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520
|||||||| ||||| | | | | | || | || || || ||| || |||||| ||
Sbjct 1083272 AACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCAGCTTCACCAGC 1083330
Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
||| ||| || || ||||||||||| || || ||
Sbjct 1083331 AATTGCTTTTGCCAGCAGAGTCTTACCAGTTCCAGG 1083366
>seq11
Length=3405507
Score = 93.3 bits (102), Expect = 5e-14
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333
||||| || ||| || |||||||||| |||||| ||||||||||||||| ||| ||
Sbjct 2720235 GCAAAGTCACAGTGAAGGCCCTCATCTCTGGAAATTAGTTCATTTGAGAAGGTTAGTCCC 2720176
Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAA 117374
||||| | |||||||| |||| |||| | || ||||||||
Sbjct 2720175 GGCATCAATCCCCGCTTTTTCAGCCAAAATATGGCGCAGAA 2720135
>seq5
Length=5307744
Score = 84.2 bits (92), Expect = 3e-11
Identities = 89/115 (77%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 106279 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCG 106337
|||||| ||||||||||| || | ||||||||||||||||| | ||| || |||| | |
Sbjct 4277992 ATCCGCAAGACCTTGAACCCCAATACCAATAGGTCTGTGTCTTAGATTTGATCTTTTG-G 4278050
Query 106338 CAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAAC 106392
|||||||||| ||||| |||| ||||| | ||| |||||| | |||||
Sbjct 4278051 CAGTCTCAACAGGATAGTAATTGACATCAATTATCTTGTTCAGATTTGTTGTAAC 4278105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589973041752480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |