Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq49 127 2e-24 seq1 127 2e-24 seq60 118 1e-21 seq11 93.3 5e-14 seq5 84.2 3e-11 >seq49 Length=1248075 Score = 127 bits (140), Expect = 2e-24 Identities = 285/422 (68%), Gaps = 12/422 (3%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9282 ||||| || || | | || || || || || |||| ||| || |||||| | ||| Sbjct 901121 TCAAGAATGTCTGCCCTGTTTGTGGCAGCAATTACAATAATGCCAGTGTTTCCCT--CAA 901178 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342 | |||||||| || || | ||| ||||| | || ||||| | |||||||||| | Sbjct 901179 ACCCATCCATTTCAGTTAGAAGCTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCACC-- 901236 Query 9343 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 |||| |||| || | ||| ||| || |||||||| ||||||| || ||||| | Sbjct 901237 -ACCAATTCCAGTACCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAACACAATGC 901295 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | || |||||| ||| | | |||||||| ||||| | || || | ||| | Sbjct 901296 AAGGAGCATTTTCCTTGGCCTTCTTGAAGAGATCACGAACACGAGAAGCACCAATACCGA 901355 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9518 |||||||||| ||||| | | | ||| || | || || |||||| | |||||| Sbjct 901356 CAAACATCTCAACAAACTCGGAACCTGAA-ATGGAGAAAAATGGGACACCTGCTTCACCT 901414 Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578 |||||||| ||| || |||||||| || || ||||| ||| |||| || |||| Sbjct 901415 GCAATGGCCTTGGCTAGCAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCT 901474 Query 9579 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATC 9638 ||||| || ||| || | | |||||||| | ||| ||||| ||||| | | Sbjct 901475 TTGGGAATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTTAGAAACTCCACCACC 901534 Query 9639 TC 9640 || Sbjct 901535 TC 901536 >seq1 Length=7185522 Score = 127 bits (140), Expect = 2e-24 Identities = 222/318 (70%), Gaps = 4/318 (1%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| || || || || ||||| || | || |||||| | Sbjct 6703821 AAAGCCATCCATCTCAGTCAAGAGCTGATTGATCGTTTGCTCTCTCTCGTCATTCCCACC 6703762 Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | |||||| | | || ||||||| |||||||||||||||||||||||||| || Sbjct 6703761 TCCAAGACCAGCCCCTCTCTGTCTTCCCACAGCATCAATCTCATCAATGAAGACAATGCA 6703702 Query 9401 TGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 || | ||| | ||| | || || | || | || || || |||||||| | Sbjct 6703701 AGG-GGCTTTGGACTTGGCCTTCTCGAACAAGTCCCTCACTCTCGAAGCACCCACACCCA 6703643 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 |||||| || ||||| | || ||| | ||| || ||| || ||| || || || | Sbjct 6703642 CAAACAGTTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCCTCTCCGG 6703583 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC- 9578 | | ||| ||||| ||||||||||| || ||||| || || |||||| ||||||| Sbjct 6703582 CCACGGCCCGGGCCAGAAGAGTCTTTCCGGTACCAGGAGGTCCAACGAGGA-GGCACCCT 6703524 Query 9579 CGTGGAATCTTGGCGCCA 9596 ||| || ||||| ||| Sbjct 6703523 TTTGGGATTTTGGCTCCA 6703506 >seq60 Length=1131370 Score = 118 bits (130), Expect = 1e-21 Identities = 230/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 || || ||||| | | || || || || || |||| ||||| || | | || ||| Sbjct 1083035 TCGAGAATATCTGCCCTGTTGGTGGCAGCAATTACAATGATACCGGTATTACCCTCGAAA 1083094 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 |||||||| || || ||||||||||| | || ||||| | |||||||||| || | Sbjct 1083095 CCATCCATTTCGGTTAAAAGTTGGTTGAGTGTCTGTTCTCTTTCATCATTCCCT---CCA 1083151 Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| ||||| | | ||| || || |||||||| ||||||| || ||||| || Sbjct 1083152 CCAATCCCAGCTCCTCTTTGTCGCCCGACCGCATCAATTTCATCAACAAACACAATGCAA 1083211 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || ||| || ||| | | || || |||||||| | || || ||||||||| Sbjct 1083212 GGAGCATTCTCTTTGGCCTTCTTGAATAGGTCGCGAACTCGAGATGCACCAACACCAACA 1083271 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | | | | || | || || || ||| || |||||| || Sbjct 1083272 AACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCAGCTTCACCAGC 1083330 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||| ||| || || ||||||||||| || || || Sbjct 1083331 AATTGCTTTTGCCAGCAGAGTCTTACCAGTTCCAGG 1083366 >seq11 Length=3405507 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| || |||||||||| |||||| ||||||||||||||| ||| || Sbjct 2720235 GCAAAGTCACAGTGAAGGCCCTCATCTCTGGAAATTAGTTCATTTGAGAAGGTTAGTCCC 2720176 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAA 117374 ||||| | |||||||| |||| |||| | || |||||||| Sbjct 2720175 GGCATCAATCCCCGCTTTTTCAGCCAAAATATGGCGCAGAA 2720135 >seq5 Length=5307744 Score = 84.2 bits (92), Expect = 3e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 106279 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCG 106337 |||||| ||||||||||| || | ||||||||||||||||| | ||| || |||| | | Sbjct 4277992 ATCCGCAAGACCTTGAACCCCAATACCAATAGGTCTGTGTCTTAGATTTGATCTTTTG-G 4278050 Query 106338 CAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAAC 106392 |||||||||| ||||| |||| ||||| | ||| |||||| | ||||| Sbjct 4278051 CAGTCTCAACAGGATAGTAATTGACATCAATTATCTTGTTCAGATTTGTTGTAAC 4278105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589973041752480