Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq14 196 1e-44 seq124 185 2e-41 seq21 183 7e-41 seq15 158 3e-33 seq4 156 9e-33 seq60 100 6e-16 seq17 93.3 9e-14 >seq14 Length=2855554 Score = 196 bits (216), Expect = 1e-44 Identities = 174/218 (80%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | || || |||||||| || || || || ||||||||||||||||| |||| Sbjct 998649 AGTCTAAGCACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGA 998590 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| ||||| |||||||| ||||||||||| | ||| ||||| |||||||| || ||| Sbjct 998589 CCATCCTCGAGTTGCTTACCAGCGAAGATAAGCCTTTGCTGGTCGGGAGGAATTCCCTCT 998530 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || ||||| || ||| ||| || || |||||||| |||||||||||||| || ||||| Sbjct 998529 TTATCTTGGATCTTTGCCTTTACATTGTCAATGGTATCCGAACTTTCCACCTCGAGGGTG 998470 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | |||||| ||||| | |||||| Sbjct 998469 ATTGTTTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 998432 Score = 163 bits (180), Expect = 6e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| || || ||||| || |||||||| || | |||||| ||||||||||| ||| Sbjct 999546 TGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCTAAAGTTCTGCCATCTTCGAGTTGC 999487 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || ||||||||||| | | ||||||||||| || ||||| || ||||||||||| ||| Sbjct 999486 TTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCTTT 999427 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || |||||||| || || || |||||||| | || | ||||| || ||| Sbjct 999426 GCCTTCACATTATCAATGGTATCGGAGCTCTCCACTTCCAAAGTGATTGTCTTGCCAGTC 999367 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || | ||||| Sbjct 999366 AAGGTTTTCACAAAAATCTGCAT 999344 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| ||||| |||||||| || | ||||| |||||| || Sbjct 999780 ACGAGGTGGAGGGTCGACTCTTTCTGAATGTTGTAATCCGCCAAAGTTCGCCCATCCTCC 999721 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || ||||| | || ||||| ||||||||||| || || ||||||||| Sbjct 999720 AGTTGTTTCCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCTTGA 999661 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||| ||||| || || |||||||| ||||| || || | || | |||||| Sbjct 999660 ATCTTTGCCTTCACGTTGTCGATTGTGTCCGAGCTTTCGACCTCCAACGTGATCGTCTTC 999601 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| || || || || | ||||| Sbjct 999600 CCTGTCAGTGTCTTCACAAAGATCTGCAT 999572 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || ||||| || |||||||| || |||||||| | || || || ||||||||||| Sbjct 998857 AGTAGATTCTTTCTGGATATTGTAGTCAGCAAGAGTACGGCCGTCCTCAAGCTGCTTACC 998798 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || || || || | ||||| || ||||| || || || || ||||| ||||| ||| Sbjct 998797 AGCAAAAATCAGCCTCTGTTGATCAGGAGGGATACCCTCCTTATCTTGGATTTTAGCCTT 998738 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || || ||||| || || ||||||||||| ||||| || | || || || || | || Sbjct 998737 CACATTGTCAATCGTATCAGAACTTTCCACCTCAAGCGTGATGGTTTTGCCAGTAAGGGT 998678 Query 195123 TTTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 998677 CTTCACAAATATTTGCAT 998660 >seq124 Length=632428 Score = 185 bits (204), Expect = 2e-41 Identities = 167/210 (80%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || |||||||| ||||| |||||||| ||||||||||||||||| | |||||||| Sbjct 447257 ACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGTCCATCTTCA 447316 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| |||||||| || || | ||| ||||||||||| || ||||| ||||||||| Sbjct 447317 AGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGA 447376 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| || ||||| ||||| || ||||| || || | || | |||||| Sbjct 447377 ATCTTAGCTTTGACATTGTCAATTGTGTCGGAGCTTTCAACCTCCAATGTGATAGTCTTT 447436 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | ||||| ||||| | ||||||| Sbjct 447437 CCCGTGAGCGTTTTGACGAAAATTTGCATT 447466 Score = 170 bits (188), Expect = 4e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||||||||| || ||||||||||| || |||| || ||||||||||| Sbjct 447718 GTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCCAGGGTTCGGCCGTCTTCGAGCTG 447777 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || | || ||||| || ||||| ||||| ||||| |||||||| Sbjct 447778 CTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTGAATTTT 447837 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || ||||| || || |||||||| || |||||||||| || || || || Sbjct 447838 GGCCTTTACATTGTCAATAGTATCAGAACTTTCAACCTCAAGGGTAATTGTTTTGCCGGT 447897 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | |||||| || || | ||||| Sbjct 447898 GAGAGTTTTCACAAATATCTGCAT 447921 Score = 147 bits (162), Expect = 5e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| ||||||||||||||||| || ||||| | ||| || || ||||| || ||||| || Sbjct 447040 AGTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGTCTTCCAGTTGCTTTCC 447099 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 ||||| || || | || |||||||| || ||||| ||||| ||||||||||| ||| Sbjct 447100 AGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCTTGAATTTTAGCCTT 447159 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||||| || ||||| |||||||| || || || || || | || ||||| || || || Sbjct 447160 CACGTTGTCGATGGTATCCGAACTCTCAACCTCCAGAGTGATTGTTTTTCCCGTTAAGGT 447219 Query 195123 TTTTACGAACACTTGCATT 195141 || || || | |||||| Sbjct 447220 CTTCACAAAAATCTGCATT 447238 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || || ||||||||||| || || ||||| | ||||||||||| || ||||| Sbjct 447497 GTTGATTCCTTCTGAATATTGTAGTCAGCCAGAGTGCGGCCATCTTCGAGTTGTTTACCC 447556 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || || | || ||||| || ||||| || ||||| ||||| || || ||| Sbjct 447557 GCGAAAATCAGCCTCTGCTGGTCCGGTGGAATACCCTCTTTATCTTGGATCTTGGCCTTC 447616 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || || ||||| || || |||||||| || | ||| | || ||||| || | ||| Sbjct 447617 ACATTGTCGATGGTATCAGAGCTTTCCACCTCCAAGGTGATGGTTTTTCCAGTGAGGGTT 447676 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 447677 TTCACGAAGATTTGCAT 447693 Score = 116 bits (128), Expect = 8e-21 Identities = 148/200 (74%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| |||||||||||||| || || ||||| | ||| || || | ||| || ||||| || Sbjct 354457 AGTCGACTCTTTTTGAATGTTATAGTCGGCCAAAGTCCTGCCGTGTTCCAGTTGCTTTCC 354398 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGC-T 195061 ||||| || | | || |||||||| || ||||| ||||| |||||| | || || | Sbjct 354397 AGCGAAAATCAACCTCTGCTGGTCTGGTGGGATGCCCTCTTTTTCTTGA--TCTTGGCYT 354340 Query 195062 TGACGTTCTCAATGGTGTCCGAACTTTCCA-CTTCAAGGGTAACCGTCTTTCCTGTCAAA 195120 | || || || ||||| || || ||||||| | || | ||| | || ||||| || | Sbjct 354339 TCACATTGTCGATGGTATCAGAGCTTTCCACCCTCCAAGGTGATGGTTTTTCCAGTGAGG 354280 Query 195121 GTTTTTACGAACACTTGCAT 195140 ||||| ||||| | |||||| Sbjct 354279 GTTTTCACGAAGATTTGCAT 354260 >seq21 Length=2013095 Score = 183 bits (202), Expect = 7e-41 Identities = 166/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||||||||||||||| || |||||||||||||| || ||||| || ||||| || Sbjct 1809892 ACAAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCATCCTCC 1809833 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| |||||||| || || | ||| || || |||||||| || || ||||| ||| Sbjct 1809832 AGCTGCTTCCCTGCGAAAATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGA 1809773 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| || || || ||||||||||| || || ||||| || || || | ||||| Sbjct 1809772 ATTTTGGCTTTCACATTGTCAATGGTGTCGGAGCTCTCCACCTCCAGAGTGATGGTCTTC 1809713 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| || || | |||||| Sbjct 1809712 CCAGTCAAGGTTTTCACAAAGATTTGCAT 1809684 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| || || || || || ||||| ||||| || || || || |||||||| || Sbjct 1809652 GTAGACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTACCGTCCTCCAGCTGCTTTCCG 1809593 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| || | || |||||||| || || || ||||||||||| || || ||| Sbjct 1809592 GCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGGATCTTAGCCTTT 1809533 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || || |||||||||||||| || || || ||||||| || || || ||||| || Sbjct 1809532 ACATTGTCTATGGTGTCCGAACTCTCAACCTCCAGGGTAATGGTTTTCCCGGTCAACGTC 1809473 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | ||||| Sbjct 1809472 TTGACGAAAATCTGCAT 1809456 >seq15 Length=2492501 Score = 158 bits (174), Expect = 3e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||||||||||||||| || || || |||||||| || ||||| |||||||| || Sbjct 255630 ACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCCAGAGTCCTCCCATCCTCC 255689 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | | || |||||||||||||| || || ||||| ||| Sbjct 255690 AGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCCTGA 255749 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| ||||| || || || || ||||| || | ||| | ||||| Sbjct 255750 ATCTTCGCCTTCACGTTGTCAATCGTATCTGAGCTCTCCACCTCCAAGGTGATGGTCTTC 255809 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | || || ||||| | |||||| Sbjct 255810 CCGGTAAGGGTCTTCACGAAGATCTGCATT 255839 >seq4 Length=5448771 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || ||||||||||| || || ||||| ||||||||||||| ||||| || Sbjct 205240 ACAAGGTGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGACCATCCTCC 205299 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || || || || || || ||||| || || || || || ||||| ||| Sbjct 205300 AGCTGCTTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGA 205359 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || || ||||| || ||||| || || || || || | ||||| Sbjct 205360 ATCTTGGCCTTCACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTC 205419 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| ||||| ||||| | ||||| Sbjct 205420 CCTGTCAGCGTTTTCACGAAGATCTGCAT 205448 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| || || || ||||| || |||||||| || || || ||||||||||| || |||| Sbjct 199555 GAGCCTTAACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCG 199614 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || || ||||||||||| || ||||| || || || ||||| || || || || || Sbjct 199615 GCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTC 199674 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| ||||| ||| ||| || || || ||||| || || || || || || || || Sbjct 199675 CTTGTCCTGAATCTTTGCCTTCACATTGTCGATGGTATCGGAGCTCTCAACCTCGAGAGT 199734 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || ||||| ||||| || || | ||||| Sbjct 199735 TATGGTCTTCCCCGTCAACGTTTTCACAAAGATCTGCAT 199773 >seq60 Length=1131370 Score = 100 bits (110), Expect = 6e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| ||||| || |||||||| || ||||| ||||| || || ||||| ||||| ||| Sbjct 437125 CTGAGCCTCAAGACCAGGTGAAGGGTTGACTCCTTTTGGATGTTATAATCTGCAAGTGTT 437184 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||| || | |||||||| || || || | | ||| ||||| || || || ||| Sbjct 437185 CGACCATCATCCAATTGCTTACCAGCAAAAATTAACCTTTGCTGGTCAGGTGGGATACCT 437244 Query 195040 TCTTTGTC 195047 |||||||| Sbjct 437245 TCTTTGTC 437252 >seq17 Length=2382667 Score = 93.3 bits (102), Expect = 9e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||| || |||||||| ||||| ||||||| |||||| || |||||||| || ||||||| Sbjct 2194498 CTTTCTGGATATTGTAGTCGGCGAGAGTTCGCCCATCCTCAAGCTGCTTCCCGGCGAAGA 2194439 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 |||||| ||| ||||| || || || ||| Sbjct 2194438 TAAGTCTTTGCTGGTCCGGGGGGATACCT 2194410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109466645574884