Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq14 196 1e-44
seq124 185 2e-41
seq21 183 7e-41
seq15 158 3e-33
seq4 156 9e-33
seq60 100 6e-16
seq17 93.3 9e-14
>seq14
Length=2855554
Score = 196 bits (216), Expect = 1e-44
Identities = 174/218 (80%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
||||| | || || |||||||| || || || || ||||||||||||||||| ||||
Sbjct 998649 AGTCTAAGCACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGA 998590
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
||||| ||||| |||||||| ||||||||||| | ||| ||||| |||||||| || |||
Sbjct 998589 CCATCCTCGAGTTGCTTACCAGCGAAGATAAGCCTTTGCTGGTCGGGAGGAATTCCCTCT 998530
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| ||||| || ||| ||| || || |||||||| |||||||||||||| || |||||
Sbjct 998529 TTATCTTGGATCTTTGCCTTTACATTGTCAATGGTATCCGAACTTTCCACCTCGAGGGTG 998470
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| || || || || | |||||| ||||| | ||||||
Sbjct 998469 ATTGTTTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 998432
Score = 163 bits (180), Expect = 6e-35
Identities = 158/203 (78%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| ||||| || || ||||| || |||||||| || | |||||| ||||||||||| |||
Sbjct 999546 TGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCTAAAGTTCTGCCATCTTCGAGTTGC 999487
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| ||||||||||| | | ||||||||||| || ||||| || ||||||||||| |||
Sbjct 999486 TTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCTTT 999427
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||| || || |||||||| || || || |||||||| | || | ||||| || |||
Sbjct 999426 GCCTTCACATTATCAATGGTATCGGAGCTCTCCACTTCCAAAGTGATTGTCTTGCCAGTC 999367
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
|| ||||| || || | |||||
Sbjct 999366 AAGGTTTTCACAAAAATCTGCAT 999344
Score = 156 bits (172), Expect = 9e-33
Identities = 160/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || |||||||| ||||| |||||||| || | ||||| |||||| ||
Sbjct 999780 ACGAGGTGGAGGGTCGACTCTTTCTGAATGTTGTAATCCGCCAAAGTTCGCCCATCCTCC 999721
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| || || || || ||||| | || ||||| ||||||||||| || || |||||||||
Sbjct 999720 AGTTGTTTCCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCTTGA 999661
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| ||| ||| ||||| || || |||||||| ||||| || || | || | ||||||
Sbjct 999660 ATCTTTGCCTTCACGTTGTCGATTGTGTCCGAGCTTTCGACCTCCAACGTGATCGTCTTC 999601
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||||| || || || || | |||||
Sbjct 999600 CCTGTCAGTGTCTTCACAAAGATCTGCAT 999572
Score = 123 bits (136), Expect = 6e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002
||| || ||||| || |||||||| || |||||||| | || || || |||||||||||
Sbjct 998857 AGTAGATTCTTTCTGGATATTGTAGTCAGCAAGAGTACGGCCGTCCTCAAGCTGCTTACC 998798
Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062
|| || || || | ||||| || ||||| || || || || ||||| ||||| |||
Sbjct 998797 AGCAAAAATCAGCCTCTGTTGATCAGGAGGGATACCCTCCTTATCTTGGATTTTAGCCTT 998738
Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122
|| || ||||| || || ||||||||||| ||||| || | || || || || | ||
Sbjct 998737 CACATTGTCAATCGTATCAGAACTTTCCACCTCAAGCGTGATGGTTTTGCCAGTAAGGGT 998678
Query 195123 TTTTACGAACACTTGCAT 195140
|| || || | ||||||
Sbjct 998677 CTTCACAAATATTTGCAT 998660
>seq124
Length=632428
Score = 185 bits (204), Expect = 2e-41
Identities = 167/210 (80%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || |||||||| ||||| |||||||| ||||||||||||||||| | ||||||||
Sbjct 447257 ACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGTCCATCTTCA 447316
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| |||||||| || || | ||| ||||||||||| || ||||| |||||||||
Sbjct 447317 AGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGA 447376
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||| || ||||| ||||| || ||||| || || | || | ||||||
Sbjct 447377 ATCTTAGCTTTGACATTGTCAATTGTGTCGGAGCTTTCAACCTCCAATGTGATAGTCTTT 447436
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| || | ||||| ||||| | |||||||
Sbjct 447437 CCCGTGAGCGTTTTGACGAAAATTTGCATT 447466
Score = 170 bits (188), Expect = 4e-37
Identities = 160/204 (78%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || |||||||||||||| || ||||||||||| || |||| || |||||||||||
Sbjct 447718 GTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCCAGGGTTCGGCCGTCTTCGAGCTG 447777
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| || | || ||||| || ||||| ||||| ||||| ||||||||
Sbjct 447778 CTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTGAATTTT 447837
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| || || ||||| || || |||||||| || |||||||||| || || || ||
Sbjct 447838 GGCCTTTACATTGTCAATAGTATCAGAACTTTCAACCTCAAGGGTAATTGTTTTGCCGGT 447897
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
| |||||| || || | |||||
Sbjct 447898 GAGAGTTTTCACAAATATCTGCAT 447921
Score = 147 bits (162), Expect = 5e-30
Identities = 152/199 (76%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002
||| ||||||||||||||||| || ||||| | ||| || || ||||| || ||||| ||
Sbjct 447040 AGTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGTCTTCCAGTTGCTTTCC 447099
Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062
||||| || || | || |||||||| || ||||| ||||| ||||||||||| |||
Sbjct 447100 AGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCTTGAATTTTAGCCTT 447159
Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122
||||| || ||||| |||||||| || || || || || | || ||||| || || ||
Sbjct 447160 CACGTTGTCGATGGTATCCGAACTCTCAACCTCCAGAGTGATTGTTTTTCCCGTTAAGGT 447219
Query 195123 TTTTACGAACACTTGCATT 195141
|| || || | ||||||
Sbjct 447220 CTTCACAAAAATCTGCATT 447238
Score = 131 bits (144), Expect = 4e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003
|| || || || ||||||||||| || || ||||| | ||||||||||| || |||||
Sbjct 447497 GTTGATTCCTTCTGAATATTGTAGTCAGCCAGAGTGCGGCCATCTTCGAGTTGTTTACCC 447556
Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063
||||| || || | || ||||| || ||||| || ||||| ||||| || || |||
Sbjct 447557 GCGAAAATCAGCCTCTGCTGGTCCGGTGGAATACCCTCTTTATCTTGGATCTTGGCCTTC 447616
Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123
|| || || ||||| || || |||||||| || | ||| | || ||||| || | |||
Sbjct 447617 ACATTGTCGATGGTATCAGAGCTTTCCACCTCCAAGGTGATGGTTTTTCCAGTGAGGGTT 447676
Query 195124 TTTACGAACACTTGCAT 195140
|| ||||| | ||||||
Sbjct 447677 TTCACGAAGATTTGCAT 447693
Score = 116 bits (128), Expect = 8e-21
Identities = 148/200 (74%), Gaps = 4/200 (2%)
Strand=Plus/Minus
Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002
||| |||||||||||||| || || ||||| | ||| || || | ||| || ||||| ||
Sbjct 354457 AGTCGACTCTTTTTGAATGTTATAGTCGGCCAAAGTCCTGCCGTGTTCCAGTTGCTTTCC 354398
Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGC-T 195061
||||| || | | || |||||||| || ||||| ||||| |||||| | || || |
Sbjct 354397 AGCGAAAATCAACCTCTGCTGGTCTGGTGGGATGCCCTCTTTTTCTTGA--TCTTGGCYT 354340
Query 195062 TGACGTTCTCAATGGTGTCCGAACTTTCCA-CTTCAAGGGTAACCGTCTTTCCTGTCAAA 195120
| || || || ||||| || || ||||||| | || | ||| | || ||||| || |
Sbjct 354339 TCACATTGTCGATGGTATCAGAGCTTTCCACCCTCCAAGGTGATGGTTTTTCCAGTGAGG 354280
Query 195121 GTTTTTACGAACACTTGCAT 195140
||||| ||||| | ||||||
Sbjct 354279 GTTTTCACGAAGATTTGCAT 354260
>seq21
Length=2013095
Score = 183 bits (202), Expect = 7e-41
Identities = 166/209 (79%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||||||||||||||| || |||||||||||||| || ||||| || ||||| ||
Sbjct 1809892 ACAAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCATCCTCC 1809833
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| |||||||| || || | ||| || || |||||||| || || ||||| |||
Sbjct 1809832 AGCTGCTTCCCTGCGAAAATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGA 1809773
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
||||| || || || ||||||||||| || || ||||| || || || | |||||
Sbjct 1809772 ATTTTGGCTTTCACATTGTCAATGGTGTCGGAGCTCTCCACCTCCAGAGTGATGGTCTTC 1809713
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| ||||| || || | ||||||
Sbjct 1809712 CCAGTCAAGGTTTTCACAAAGATTTGCAT 1809684
Score = 140 bits (154), Expect = 7e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003
|| ||||| || || || || || ||||| ||||| || || || || |||||||| ||
Sbjct 1809652 GTAGACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTACCGTCCTCCAGCTGCTTTCCG 1809593
Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063
|||||||| || | || |||||||| || || || ||||||||||| || || |||
Sbjct 1809592 GCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGGATCTTAGCCTTT 1809533
Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123
|| || || |||||||||||||| || || || ||||||| || || || ||||| ||
Sbjct 1809532 ACATTGTCTATGGTGTCCGAACTCTCAACCTCCAGGGTAATGGTTTTCCCGGTCAACGTC 1809473
Query 195124 TTTACGAACACTTGCAT 195140
|| ||||| | |||||
Sbjct 1809472 TTGACGAAAATCTGCAT 1809456
>seq15
Length=2492501
Score = 158 bits (174), Expect = 3e-33
Identities = 161/210 (77%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||||||||||||||| || || || |||||||| || ||||| |||||||| ||
Sbjct 255630 ACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCCAGAGTCCTCCCATCCTCC 255689
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| | | || |||||||||||||| || || ||||| |||
Sbjct 255690 AGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCCTGA 255749
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| ||||| ||||| || || || || ||||| || | ||| | |||||
Sbjct 255750 ATCTTCGCCTTCACGTTGTCAATCGTATCTGAGCTCTCCACCTCCAAGGTGATGGTCTTC 255809
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| || | || || ||||| | ||||||
Sbjct 255810 CCGGTAAGGGTCTTCACGAAGATCTGCATT 255839
>seq4
Length=5448771
Score = 156 bits (172), Expect = 9e-33
Identities = 160/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| || ||||||||||| || || ||||| ||||||||||||| ||||| ||
Sbjct 205240 ACAAGGTGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGACCATCCTCC 205299
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||||||||| || || || || || || ||||| || || || || || ||||| |||
Sbjct 205300 AGCTGCTTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGA 205359
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || || || ||||| || ||||| || || || || || | |||||
Sbjct 205360 ATCTTGGCCTTCACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTC 205419
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||||| ||||| ||||| | |||||
Sbjct 205420 CCTGTCAGCGTTTTCACGAAGATCTGCAT 205448
Score = 143 bits (158), Expect = 6e-29
Identities = 163/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981
||| || || || ||||| || |||||||| || || || ||||||||||| || ||||
Sbjct 199555 GAGCCTTAACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCG 199614
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
|| || || ||||||||||| || ||||| || || || ||||| || || || || ||
Sbjct 199615 GCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTC 199674
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101
||||| ||||| ||| ||| || || || ||||| || || || || || || || ||
Sbjct 199675 CTTGTCCTGAATCTTTGCCTTCACATTGTCGATGGTATCGGAGCTCTCAACCTCGAGAGT 199734
Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||||| || ||||| ||||| || || | |||||
Sbjct 199735 TATGGTCTTCCCCGTCAACGTTTTCACAAAGATCTGCAT 199773
>seq60
Length=1131370
Score = 100 bits (110), Expect = 6e-16
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979
||||| ||||| || |||||||| || ||||| ||||| || || ||||| ||||| |||
Sbjct 437125 CTGAGCCTCAAGACCAGGTGAAGGGTTGACTCCTTTTGGATGTTATAATCTGCAAGTGTT 437184
Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039
| ||||| || | |||||||| || || || | | ||| ||||| || || || |||
Sbjct 437185 CGACCATCATCCAATTGCTTACCAGCAAAAATTAACCTTTGCTGGTCAGGTGGGATACCT 437244
Query 195040 TCTTTGTC 195047
||||||||
Sbjct 437245 TCTTTGTC 437252
>seq17
Length=2382667
Score = 93.3 bits (102), Expect = 9e-14
Identities = 74/89 (83%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010
|||| || |||||||| ||||| ||||||| |||||| || |||||||| || |||||||
Sbjct 2194498 CTTTCTGGATATTGTAGTCGGCGAGAGTTCGCCCATCCTCAAGCTGCTTCCCGGCGAAGA 2194439
Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039
|||||| ||| ||||| || || || |||
Sbjct 2194438 TAAGTCTTTGCTGGTCCGGGGGGATACCT 2194410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109466645574884
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