Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq4 111 1e-19 seq15 89.7 3e-13 seq14 87.8 1e-12 >seq4 Length=5448771 Score = 111 bits (122), Expect = 1e-19 Identities = 144/197 (73%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| | ||| |||| |||| |||||||| || || ||||| Sbjct 205258 TCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGACCATCCTCCAGCTGCTTACCAGCAAAA 205317 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| || || || Sbjct 205318 ATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGAATCTTGGCCTTCAC--AT 205375 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 ||||||| ||| ||| || |||| |||||||| || || || || || || Sbjct 205376 --TATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCTGTCAGCGTTTT 205433 Query 34967 CACAAAGATCTGCATAT 34983 ||| ||||||||||||| Sbjct 205434 CACGAAGATCTGCATAT 205450 Score = 98.7 bits (108), Expect = 6e-16 Identities = 142/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || | ||| |||| | || || ||||| || || ||||| Sbjct 199583 TCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAG 199642 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| || || || Sbjct 199643 ATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGAATCTTTGCCTTCAC--AT 199700 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || | |||||| |||| |||||||| || ||||| | || || Sbjct 199701 --TGTCGATGGTATCGGAGCTCTCAACCTCGAGAGTTATGGTCTTCCCCGTCAACGTTTT 199758 Query 34967 CACAAAGATCTGCATATT 34984 |||||||||||||||||| Sbjct 199759 CACAAAGATCTGCATATT 199776 >seq15 Length=2492501 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| || ||||| ||||| || || | || | | |||| |||||||| Sbjct 255635 GTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCCAGAGTCCTCCCATCCTCCAGCTG 255694 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 ||||| ||||| || | | ||||||||| | || | ||||||||||| |||||| Sbjct 255695 CTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCCTGAATCTT 255754 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 | || ||| | |||| || | ||| || || | ||| ||||| || || || Sbjct 255755 CGCCTTCACGTTGTCAATCGTATCTGAGCTCTCCACCTCCAAGGTGATGGTCTTCCCGGT 255814 Query 34958 GAGAGTCTTCACAAAGATCTGCAT 34981 || |||||||| ||||||||||| Sbjct 255815 AAGGGTCTTCACGAAGATCTGCAT 255838 >seq14 Length=2855554 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/197 (72%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAA 34848 |||||||||||||| || |||| |||| |||| |||| ||||| ||||| || |||| Sbjct 999762 TCTTTCTGAATGTTGTAATCCGCCAAAG--TTCGCCCATCCTCCAGTTGTTTCCCAGCAA 999705 Query 34849 ATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG 34908 | || | || || || ||| | || | |||||||||||| |||||| || || Sbjct 999704 AGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCTTGAATCTTTGCCTTCAC-- 999647 Query 34909 ATGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 | | ||||| | ||| || || || || | || || || || || || || ||| Sbjct 999646 --GTTGTCGATTGTGTCCGAGCTTTCGACCTCCAACGTGATCGTCTTCCCTGTCAGTGTC 999589 Query 34965 TTCACAAAGATCTGCAT 34981 ||||||||||||||||| Sbjct 999588 TTCACAAAGATCTGCAT 999572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324629437791456