Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq5 114 1e-20
seq52 105 8e-18
>seq5
Length=5307744
Score = 114 bits (126), Expect = 1e-20
Identities = 160/222 (72%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
||||||||||| | ||||| ||||||| || |||| | | ||| || ||||| |||
Sbjct 4279356 CCTCCTTGATCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATGGGCACAATTCCA 4279415
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| || | ||||| ||||| ||| ||||| || | || | || || || |||
Sbjct 4279416 TTAGAGGTCCCATTTGTTCCACGAATGTAACTGCCCATGGCACGAATGTTGTGGATGGAA 4279475
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACAC-CGTTTAAGGGTATCATAAAT 48538
| ||| |||||||| || ||| || | ||||||| | ||||| ||||||||| ||
Sbjct 4279476 ACACCAATACCACCAGCTGATTTGCTAATAACAGCACACTCCTTTAA-GGTATCATATAT 4279534
Query 48539 TCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580
||||||||||| |||||| ||||| || || ||||| ||
Sbjct 4279535 CCCTTCTATACTGTCATCTTTCATACATACAAGGAAACAGCT 4279576
Score = 91.5 bits (100), Expect = 2e-13
Identities = 153/215 (71%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATA-ACAATTT 48658
||||| || || || | || |||||||||||| ||||||| | ||| | | | | |
Sbjct 4279716 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCAC--CGTTGAGACATAGTGT 4279773
Query 48659 A-TATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATT 48716
||||||| ||| |||| || ||||| | ||| || ||||| | || || | ||||
Sbjct 4279774 GGTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATT 4279832
Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776
| ||| | ||||||||| || |||| || | | |||||||| ||||| |||||
Sbjct 4279833 AGCATGTGTTGAGGTCTCTCCACAACCTTACCCTGAACCTTCAAAAGGTATGACCTTTCC 4279892
Query 48777 AATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811
| ||||| ||||||||||||| || ||||||
Sbjct 4279893 AGAGTTTTGAAACCAAAATAGTCATAATCAAAGTC 4279927
>seq52
Length=1204374
Score = 105 bits (116), Expect = 8e-18
Identities = 158/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
|||||||| || | ||||| ||||||| || |||| | | ||| || ||||| |||
Sbjct 502996 CCTCCTTGGTCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATAGGCACAATCCCA 503055
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| || | || || ||||| || ||||| || |||| | ||||| || |||
Sbjct 503056 TTAGAGGTTCCGTTTGTTCCACGGATGTAACTGCCCATAGCACGAATATTGTGGATAGAA 503115
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACAC-CGTTTAAGGGTATCATAAAT 48538
| ||| || ||||| || ||| || | ||||||| | ||||||| ||||||| ||
Sbjct 503116 ACACCAATGCCACCAGCTGATTTGCTGATAACAGCACACTCCTTTAAGG-TATCATATAT 503174
Query 48539 TCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580
|||||||||||||| ||| |||| || || ||||||||
Sbjct 503175 ACCTTCTATACTATCGTCTTTCATGCATACAAGGAAACAACT 503216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562101408269280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |