Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 seq52 105 8e-18 >seq5 Length=5307744 Score = 114 bits (126), Expect = 1e-20 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||||| ||||||| || |||| | | ||| || ||||| ||| Sbjct 4279356 CCTCCTTGATCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATGGGCACAATTCCA 4279415 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| ||||| ||| ||||| || | || | || || || ||| Sbjct 4279416 TTAGAGGTCCCATTTGTTCCACGAATGTAACTGCCCATGGCACGAATGTTGTGGATGGAA 4279475 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACAC-CGTTTAAGGGTATCATAAAT 48538 | ||| |||||||| || ||| || | ||||||| | ||||| ||||||||| || Sbjct 4279476 ACACCAATACCACCAGCTGATTTGCTAATAACAGCACACTCCTTTAA-GGTATCATATAT 4279534 Query 48539 TCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 ||||||||||| |||||| ||||| || || ||||| || Sbjct 4279535 CCCTTCTATACTGTCATCTTTCATACATACAAGGAAACAGCT 4279576 Score = 91.5 bits (100), Expect = 2e-13 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATA-ACAATTT 48658 ||||| || || || | || |||||||||||| ||||||| | ||| | | | | | Sbjct 4279716 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCAC--CGTTGAGACATAGTGT 4279773 Query 48659 A-TATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATT 48716 ||||||| ||| |||| || ||||| | ||| || ||||| | || || | |||| Sbjct 4279774 GGTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATT 4279832 Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776 | ||| | ||||||||| || |||| || | | |||||||| ||||| ||||| Sbjct 4279833 AGCATGTGTTGAGGTCTCTCCACAACCTTACCCTGAACCTTCAAAAGGTATGACCTTTCC 4279892 Query 48777 AATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811 | ||||| ||||||||||||| || |||||| Sbjct 4279893 AGAGTTTTGAAACCAAAATAGTCATAATCAAAGTC 4279927 >seq52 Length=1204374 Score = 105 bits (116), Expect = 8e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||||| ||||||| || |||| | | ||| || ||||| ||| Sbjct 502996 CCTCCTTGGTCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATAGGCACAATCCCA 503055 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | || || ||||| || ||||| || |||| | ||||| || ||| Sbjct 503056 TTAGAGGTTCCGTTTGTTCCACGGATGTAACTGCCCATAGCACGAATATTGTGGATAGAA 503115 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACAC-CGTTTAAGGGTATCATAAAT 48538 | ||| || ||||| || ||| || | ||||||| | ||||||| ||||||| || Sbjct 503116 ACACCAATGCCACCAGCTGATTTGCTGATAACAGCACACTCCTTTAAGG-TATCATATAT 503174 Query 48539 TCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 |||||||||||||| ||| |||| || || |||||||| Sbjct 503175 ACCTTCTATACTATCGTCTTTCATGCATACAAGGAAACAACT 503216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562101408269280