Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq609 408 1e-109 seq424 374 3e-99 seq850 167 7e-37 seq76 152 2e-32 seq8 147 6e-31 seq96 105 2e-18 >seq609 Length=9483 Score = 408 bits (452), Expect = 1e-109 Identities = 589/833 (71%), Gaps = 0/833 (0%) Strand=Plus/Plus Query 25952 GTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCT 26011 ||||| || || || | |||||||||||||| || || || || | |||| | ||| Sbjct 4321 GTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATCCCTACTTCT 4380 Query 26012 AACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTA 26071 || || || | || |||||| |||| |||||||||| | | || || ||| || Sbjct 4381 GCAGCTATTGGGTTGCACTTTTACMCGATATGGGAAGCTGCTTCCGTTGATGAATGGTTA 4440 Query 26072 TACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATAT 26131 |||||||| || || ||| | || ||| | | ||||||||| | || |||||| || Sbjct 4441 TACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCATGTTAC 4500 Query 26132 GCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCA 26191 || || |||||||||| || | | || || ||| || ||||| ||||||| Sbjct 4501 ATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTATGCKTCCTTGGATTGCTGTTGCA 4560 Query 26192 TATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGG 26251 ||| |||| || | | || ||| || || ||||| | || || | || ||||| Sbjct 4561 TATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGA 4620 Query 26252 AGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTC 26311 || ||| ||| || |||||||| || |||||||||||||| ||||| ||| | |||||| Sbjct 4621 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 4680 Query 26312 CAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTC 26371 || || || || || || || ||||||||||| || ||| ||||| | ||| || ||| Sbjct 4681 CAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGTTGGTGTATTC 4740 Query 26372 GGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAA 26431 || || | || ||| ||||||||| || ||||| ||||| | || ||| Sbjct 4741 GGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAA 4800 Query 26432 ACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATAT 26491 || ||||| | | || ||| | || || | || |||||||| ||||| || ||| Sbjct 4801 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAGGAAGAAACTTAT 4860 Query 26492 AATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAAT 26551 ||||| || ||||| || || || ||||| |||| || || || ||||| ||||| || Sbjct 4861 AATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAAC 4920 Query 26552 AACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACA 26611 || |||||| | |||||||| || ||| ||||||| || || || || ||| | || Sbjct 4921 AATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACC 4980 Query 26612 TCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTA 26671 || | ||||| |||| ||||| || ||| |||||||||| || || ||||| || ||| Sbjct 4981 GCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTA 5040 Query 26672 GTAGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTC 26731 || || | | || |||| ||| ||||||||| | | ||||| ||||| || Sbjct 5041 GTTSATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTT 5100 Query 26732 GGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784 || | ||||||||||| || ||||||||||| ||||| || || |||||||| Sbjct 5101 GGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACTTAGC 5153 >seq424 Length=105662 Score = 374 bits (414), Expect = 3e-99 Identities = 580/831 (70%), Gaps = 2/831 (0%) Strand=Plus/Plus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||| | |||||||| || | |||||||| || || | Sbjct 94874 TTCTGTAACTGGATAACCAGCACTAAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTR 94933 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920 ||||| || |||| | | || ||| | ||| ||||| || ||||||| || || || Sbjct 94934 ATGATCCCTACCTTATTGACYGCAACTTC-TGTATTTATTATTRCCTTCATTGCTGCTCC 94992 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || ||||||| ||||| || |||| || ||||| || || || | ||||||||||| Sbjct 94993 TCCAATAGATATTGATGGTATTAGTGAACCTGTTTCTGGATCTCTAYTTTACGGAAACAA 95052 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 ||| || || || || | |||| | ||| || || || | || |||||| |||| Sbjct 95053 TATTATTTCTGGTGCCATTATCCCTACTTCTGCAGCTATYGGGTTGCACTTTTACYCGAT 95112 Query 26041 CTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTAT 26100 |||||||||| | | || || ||| |||||||||| || || ||| | || ||| | Sbjct 95113 ATGGGAAGCTGCTTCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 95172 Query 26101 CTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAG 26160 | ||||||||| | || |||||| || || ||| |||||||||| || | | Sbjct 95173 TCTACACTTCTTACTTGGTGTAGCATGTTACATGGGTAGAGAGTGGGAACTTAGTTTCCG 95232 Query 26161 ACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGC 26220 || || ||| | || ||||| |||||||||| |||| || | | || ||| | Sbjct 95233 TCTGGGTATGYGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTRC 95292 Query 26221 AGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTAT 26280 || ||||| | || || | || |||| || ||| ||| || |||||||| || || Sbjct 95293 TGTTTTCTTRATMTACCCAATTGGTMAAGGAAGCTTTTMTGACGGTATGCCTCTAGGAAT 95352 Query 26281 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCC 26340 |||||||||||| ||||| ||| | |||||||| | || || || || || |||||||| Sbjct 95353 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGACTGAGCACAACATCCTTATGCACCC 95412 Query 26341 ATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGG 26400 ||| || ||| | ||| ||||| || ||||| | | || ||| ||||||||| || Sbjct 95413 ATTTCACATGTTAGSTGTAGCTGGTGTATTCGGCRGCTCCCTATTCAGTGCTATGCATGG 95472 Query 26401 AAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGG 26460 ||||| ||||| | || ||||| ||||| | | || ||| | || Sbjct 95473 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 95532 Query 26461 CTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 26520 || | || |||||||| ||||| || |||||||| || ||||| || || || ||||| Sbjct 95533 TTACATATTCGGGCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 95592 Query 26521 GAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGC 26580 |||| || || || ||||| ||||| || || |||||| | |||||||| ||||| Sbjct 95593 CCGATTTATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTTGC 95652 Query 26581 TACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAAT 26631 | ||||||| || || || || ||| | || || | ||||| |||| || Sbjct 95653 TGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTAT 95703 Score = 329 bits (364), Expect = 9e-86 Identities = 535/774 (69%), Gaps = 2/774 (0%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| ||| ||| || | |||||||| || || | Sbjct 27445 TTCTGTAACTGGATAACCAGCACTGAAAACYRTCTTTAYATTGGATGGTTTGGTGTTTTG 27386 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920 ||||| || |||| | | || ||| | ||| ||||| |||||||||| || || || Sbjct 27385 ATGATCCCTACCTTATTGACYGCAACTTC-TGTATTTATTATTGCCTTCATTGCTGCTCC 27327 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || |||| ||| ||||| || |||| || |||| || || || | ||||||||||| Sbjct 27326 TCCAGTAGRTATTGATGGTATTMGTGAACCTGTTTMTGGATCTCTAYTTTACGGAAACAA 27267 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 ||| || || || || | |||| | ||| || || || | || ||||||||||| Sbjct 27266 TATTATTTCTGGTGCCATTATCCCTACTTCTGCAGCTATYGGGTTGCACTTTTACCCGAT 27207 Query 26041 CTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTAT 26100 |||||||||| | || || ||| |||||||||| || || ||| | || ||| | Sbjct 27206 ATGGGAAGCTGCTTYCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 27147 Query 26101 CTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAG 26160 | ||| ||||| | || |||||| || || || |||||||||| || | | Sbjct 27146 TCTACACWTCTTACTTGGTGTAGCATGTTACATGGGTCGAGAGTGGGAACTTAGTTTCCG 27087 Query 26161 ACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGC 26220 || || ||| | || ||||| |||||||||| |||| || | | || ||| || Sbjct 27086 TCTGGGTATGTGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 27027 Query 26221 AGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTAT 26280 || ||||| | || || | || |||| || ||| ||| || |||||||| || || Sbjct 27026 TGTTTTCTTGATCTACCCAATTGGTAAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAAT 26967 Query 26281 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCC 26340 |||||||||||| ||||| ||| | || ||||| || || || || || || |||||||| Sbjct 26966 CTCTGGTACTTTCAACTTCATGATTGTGTTCCAGGCTGAGCACAACATCCTTATGCACCC 26907 Query 26341 ATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGG 26400 ||| || ||| ||||| ||||| || ||||| | | || ||| ||||||||| || Sbjct 26906 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCRGCTCCCTATTCAGTGCTATGCATGG 26847 Query 26401 AAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGG 26460 ||||| ||||| | || ||||| | ||| | | || ||| | | Sbjct 26846 TTCCTTGGTAACTTCTAGTTTGATCAAGGAAACCATAGAAAATGAATCTGCTAATGAAGT 26787 Query 26461 CTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 26520 || | || |||||||| ||||| || |||||||| || ||||| | || || ||||| Sbjct 26786 TTACAGATTCGGGCAAGAGGAAGAAACTTATAATATCGTAGCTGCTTATGGTTATTTTGG 26727 Query 26521 GAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTT 26574 |||| || || || ||||| ||||| || || |||||| | |||||||| Sbjct 26726 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTT 26673 >seq850 Length=2209 Score = 167 bits (184), Expect = 7e-37 Identities = 224/310 (72%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| |||||||| ||| | |||||||| || || | Sbjct 28 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTG 87 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920 ||||| || |||| | | || ||| | ||| ||||| |||||||||| || || || Sbjct 88 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCATTGCTGCTCC 146 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || |||||||| ||||| || ||||| || ||||| || || || | ||||||||||| Sbjct 147 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 206 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 ||| || || || || | |||| | ||| || || || | || ||||||||||| Sbjct 207 TATTATWTCTGGTGCCATTATCCCTACTTCTGCAGCTATTGGGTTGCACTTTTACCCGAT 266 Query 26041 CTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTAT 26100 |||||||||| | | || || ||| |||||||||| || || ||| | || ||| | Sbjct 267 ATGGGAAGCTGCTTCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 326 Query 26101 CTTCCACTTC 26110 | |||||| Sbjct 327 TCTACACTTC 336 >seq76 Length=1023076 Score = 152 bits (168), Expect = 2e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26558 CGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATG 26617 |||||| | |||||||| || ||| ||||||| || || || || ||| | || || | Sbjct 1004321 CGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTA 1004380 Query 26618 GGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT 26677 ||||| |||| ||||| || ||| |||||||||| || || ||||| || ||||| ||| Sbjct 1004381 GGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 1004440 Query 26678 GTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTT 26737 | | || |||| ||| ||||||||| | | ||||| ||||| || || | Sbjct 1004441 AGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATG 1004500 Query 26738 GAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784 ||||||||||| || ||||||||||| ||||| || || |||||||| Sbjct 1004501 GAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACTTAGC 1004547 >seq8 Length=4047118 Score = 147 bits (162), Expect = 6e-31 Identities = 222/313 (71%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 25845 GATGGTTCGGGGTGCTTATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTT 25903 ||||||| || || | ||||| || |||| | | || ||| | ||| ||||| || Sbjct 2331940 GATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATT 2331998 Query 25904 GCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCG 25963 | |||||| || || || || |||||||| ||| | || ||||| || ||||| || || Sbjct 2331999 GTCTTCATTGCTGCTCCTCCAGTAGATATTGATAGTATTCGTGAACCTGTTTCTGGATCT 2332058 Query 25964 TTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGA 26023 || | |||||||||||||| || || || || | |||| | ||| || || || Sbjct 2332059 CTACTTTACGGAAACAATATTATTTCTGGTGCCATTATCCCTACTTCTGCAGCTATTGGG 2332118 Query 26024 CTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGA 26083 | || ||||||||||| |||||||||| | | || || ||| |||||||||| || Sbjct 2332119 TTGCACTTTTACCCGATATGGGAAGCTGCTTCCGTTGATGAATGGTTATACAATGGTGGT 2332178 Query 26084 CCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAG 26143 || ||| | || ||| | | ||||||||| | || |||||| || || || || Sbjct 2332179 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCATGTTACATGGGTCGAGAG 2332238 Query 26144 TGGGAACTATCTT 26156 |||||||||| || Sbjct 2332239 TGGGAACTATTTT 2332251 >seq96 Length=850568 Score = 105 bits (116), Expect = 2e-18 Identities = 171/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 26027 CATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCA 26086 || ||||||||||| |||||||||| | | || || ||| |||||||||| || || Sbjct 64832 CACTTTTACCCGATATGGGAAGCTGCTTCCGTTGATGAATGGTTATACAATGGTGGTCCT 64773 Query 26087 TATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGG 26146 ||| | || ||| | | ||||||||| | || |||||| || || || ||||| Sbjct 64772 TATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCATGTTACATGGGTCGAGAGTGG 64713 Query 26147 GAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTA 26206 ||||| || | | || || ||| | || ||||| |||||||||| |||| || | Sbjct 64712 GAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTT 64653 Query 26207 TCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGA 26266 | || ||| || || ||||| | || || | || ||||| || ||| ||| || Sbjct 64652 GCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGT 64593 Query 26267 ATGCCT 26272 |||||| Sbjct 64592 ATGCCT 64587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146724567020448