Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq124 143 2e-29
seq14 134 1e-26
seq21 123 2e-23
seq4 100 2e-16
>seq124
Length=632428
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| || | |||||| | || || || || || || ||||||||||| |||||||||||
Sbjct 447695 CCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCC 447754
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| |||| | | || || | ||||| || || || || | | ||| || || || |||
Sbjct 447755 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGA 447814
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| ||||| || || |||||||| |||||| | || | ||| ||||| |||| ||
Sbjct 447815 ATTCCTTCCTTGTCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACC 447874
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| || | ||||||||||| | |||||| ||||||||||||||
Sbjct 447875 TCAAGGGTAATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921
Score = 122 bits (134), Expect = 7e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332
|| || |||||||| ||||| || ||||| | ||| ||| | || |||| |||||| ||
Sbjct 447041 GTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGTCTTCCAGTTGCTTTCCA 447100
Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392
|| || |||| | ||| || || || || ||||| ||||||||||||||||| ||
Sbjct 447101 GCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCTTGAATTTTAGCCTTC 447160
Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452
|| | || | || || || | || || || ||||||| ||||| || ||||| ||
Sbjct 447161 ACGTTGTCGATGGTATCCGAACTCTCAACCTCCAGAGTGATTGTTTTTCCCGTTAAGGTC 447220
Query 101453 TTTACAAATATCTGCATGGTTACGCGAAGA 101482
|| ||||| |||||||| ||||||||
Sbjct 447221 TTCACAAAAATCTGCATTCCACCGCGAAGA 447250
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| | || ||||| || || |||||||| || || | ||| | | |||| ||
Sbjct 447485 ACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCAGCCAGAGTGCGGCCATCTTCG 447544
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||| ||||| || || |||| | ||| || || || ||||| || |||||||||||
Sbjct 447545 AGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATACCCTCTTTATCTTGG 447604
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || ||| | || | || ||||| ||||||| || | |||| |||||
Sbjct 447605 ATCTTGGCCTTCACATTGTCGATGGTATCAGAGCTTTCCACCTCCAAGGTGATGGTTTTT 447664
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | ||||| || || || |||||
Sbjct 447665 CCAGTGAGGGTTTTCACGAAGATTTGCAT 447693
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|||| |||||| || || || ||||| || ||||||||||| | ||| | |||| ||
Sbjct 447257 ACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGTCCATCTTCA 447316
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||| ||||| || || | | || || || || || || ||||| || ||||||
Sbjct 447317 AGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGA 447376
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || ||| ||| | || | ||||| || |||| || || | |||| || ||
Sbjct 447377 ATCTTAGCTTTGACATTGTCAATTGTGTCGGAGCTTTCAACCTCCAATGTGATAGTCTTT 447436
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | ||||| || || || |||||
Sbjct 447437 CCCGTGAGCGTTTTGACGAAAATTTGCAT 447465
>seq14
Length=2855554
Score = 134 bits (148), Expect = 1e-26
Identities = 152/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
|||||| |||||||| || || |||||||||||||| | |||| |||| || | |||
Sbjct 998635 ATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGACCATCCTCGAGTTG 998576
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
|||||| || || || | | || || ||||| ||||| || ||||||||||| || ||
Sbjct 998575 CTTACCAGCGAAGATAAGCCTTTGCTGGTCGGGAGGAATTCCCTCTTTATCTTGGATCTT 998516
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
| |||||| | || | || || || ||||||| || || |||| |||||||| ||
Sbjct 998515 TGCCTTTACATTGTCAATGGTATCCGAACTTTCCACCTCGAGGGTGATTGTTTTGCCAGT 998456
Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469
| |||||| || || || |||||
Sbjct 998455 GAGAGTTTTCACGAAGATTTGCAT 998432
Score = 134 bits (148), Expect = 1e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| | ||||||||||| || |||||||| || || | ||| | | | || ||
Sbjct 998868 ACCAAATGCAAAGTAGATTCTTTCTGGATATTGTAGTCAGCAAGAGTACGGCCGTCCTCA 998809
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| |||||||| ||||| |||| | ||||||||| || || || || || ||||||||
Sbjct 998808 AGCTGCTTACCAGCAAAAATCAGCCTCTGTTGATCAGGAGGGATACCCTCCTTATCTTGG 998749
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
||||| || ||| | || | || ||||| ||||||| ||||| |||| ||||||
Sbjct 998748 ATTTTAGCCTTCACATTGTCAATCGTATCAGAACTTTCCACCTCAAGCGTGATGGTTTTG 998689
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | || || |||||||| |||||
Sbjct 998688 CCAGTAAGGGTCTTCACAAATATTTGCAT 998660
>seq21
Length=2013095
Score = 123 bits (136), Expect = 2e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
||||| || || || || || ||||||||||| |||| ||| || |||| |||| |||
Sbjct 1809886 TGAAGAGTGGACTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTGC 1809827
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| ||||| || |||| | || ||||| || ||||| || || || || ||||||||
Sbjct 1809826 TTCCCTGCGAAAATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATTTTG 1809767
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||| ||| | || | ||||| || | ||||| || ||||||| || || || ||
Sbjct 1809766 GCTTTCACATTGTCAATGGTGTCGGAGCTCTCCACCTCCAGAGTGATGGTCTTCCCAGTC 1809707
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
|| ||||| ||||| || |||||
Sbjct 1809706 AAGGTTTTCACAAAGATTTGCAT 1809684
>seq4
Length=5448771
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| || || || || || || || ||||||||||| | |||| | | || || | |||
Sbjct 199571 TGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCAAGCTGC 199630
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
||||| ||||| || | |||||| || || ||||| || || || || || ||||| |||
Sbjct 199631 TTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGAATCTTT 199690
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | || || || | || || || ||||| | || || || ||
Sbjct 199691 GCCTTCACATTGTCGATGGTATCGGAGCTCTCAACCTCGAGAGTTATGGTCTTCCCCGTC 199750
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
|| ||||| ||||| ||||||||
Sbjct 199751 AACGTTTTCACAAAGATCTGCAT 199773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396273319215564
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |