Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq4 109 4e-19
seq21 98.7 8e-16
seq14 96.9 3e-15
seq31 89.7 4e-13
>seq4
Length=5448771
Score = 109 bits (120), Expect = 4e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|||| ||||| | || |||||| ||| || || || |||||||| | ||| ||||
Sbjct 199556 AGCCTTAACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGG 199615
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || | ||||||||| ||||| || || ||||| || |||| || | ||||||
Sbjct 199616 CCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTCC 199675
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||||| || ||| | | | || || ||| ||||| | ||
Sbjct 199676 TTGTCCTGAATCTTTGCCTTCACATTGTCGATGGTATCGGAGCTCTCAACCTCGAGAGTT 199735
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || |||||||| ||||| ||||| ||||||||
Sbjct 199736 ATGGTCTTCCCCGTCAACGTTTTCACAAAGATCTGCAT 199773
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
||||| ||| |||||| || || ||||| || | ||| ||||| | || |||| ||||
Sbjct 205246 TGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGACCATCCTCCAGCTGC 205305
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
||||| ||||| || || ||||| || |||| || | ||||||||||| ||||||
Sbjct 205306 TTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGAATCTTG 205365
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
|| ||| | | | | || || ||| ||||| | || || || || || |||
Sbjct 205366 GCCTTCACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCTGTC 205425
Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766
| ||||| || || ||||||||
Sbjct 205426 AGCGTTTTCACGAAGATCTGCAT 205448
>seq21
Length=2013095
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || ||| ||| || |||||||||||||||| ||| | | | || |||| ||||
Sbjct 1809886 TGAAGAGTGGACTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTGC 1809827
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| || || || ||||| | || ||||||| |||| ||||||||||| ||| ||
Sbjct 1809826 TTCCCTGCGAAAATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATTTTG 1809767
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
||| ||| | | | || || ||||||||||| || || || || || |||
Sbjct 1809766 GCTTTCACATTGTCAATGGTGTCGGAGCTCTCCACCTCCAGAGTGATGGTCTTCCCAGTC 1809707
Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767
|| ||||| ||||| || ||||||
Sbjct 1809706 AAGGTTTTCACAAAGATTTGCATC 1809683
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| || || | |||||| || | || ||| || || || || || || |
Sbjct 1809682 CCTCCCCTGAGACGAAGCACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCGGCC 1809623
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| | | | |||| |||| |||||| ||||| || ||||| | ||| || || | ||
Sbjct 1809622 AGAGTCCTACCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGG 1809563
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||||| ||||| ||||| |||||| | | | || || ||| |||
Sbjct 1809562 ATTCCCTCTTTGTCTTGGATCTTAGCCTTTACATTGTCTATGGTGTCCGAACTCTCAACC 1809503
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| ||||| ||||| || ||||| || || || |||||||||||
Sbjct 1809502 TCCAGGGTAATGGTTTTCCCGGTCAACGTCTTGACGAAAATCTGCAT 1809456
>seq14
Length=2855554
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
||||| | | ||| | |||||| || || || || || || || |||||||| |
Sbjct 999342 CCGCCTCGCAACCGAAGCACCAAGTGCAGTGTCGATTCCTTCTGTATGTTGTAATCTGCC 999283
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| | | | | || || | |||||||| ||||| ||||| | |||||| || | ||
Sbjct 999282 AGAGTCCTACCATCTTCTAGTTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCAGGTGGG 999223
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| |||||||||||| ||||| ||| ||| | | | || || ||||||
Sbjct 999222 ATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTGTCAATGGTATCAGAGCTCTCCACT 999163
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|||| || ||||| || || ||||| || || |||||||||||||||
Sbjct 999162 TCCAAAGTGATCGTCTTGCCTGTCAAGGTCTTCACAAAAATCTGCATC 999115
Score = 96.9 bits (106), Expect = 3e-15
Identities = 148/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616
||||||||| || || || ||||| || |||||||| | || | ||| | || ||
Sbjct 999553 CACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCTAAAGTTCTGCCATCTTC 999494
Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676
| ||||| || || || |||| | |||||| || | || | ||||||||||||
Sbjct 999493 GAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCTTG 999434
Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736
||||||| || ||| | | | | || || |||||| |||| || || || ||
Sbjct 999433 AATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCCACTTCCAAAGTGATTGTCTT 999374
Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| ||||| ||||| |||||||||||||||
Sbjct 999373 GCCAGTCAAGGTTTTCACAAAAATCTGCATC 999343
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
|| || || || || ||||| | ||| | | | |||| || | |||||||| |||||
Sbjct 999078 TCCTTCTGGATGTTATAATCTGCCAGAGTCCTACCGTCTTCGAGTTGCTTACCAGCAAAG 999019
Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695
|||| | |||||| || | |||| ||||||||| || ||||| ||| ||| |
Sbjct 999018 ATCAACCTCTGTTGGTCAGGTGGAATGCCCTCCTTATCTTGGATCTTGGCTTTCACATTA 998959
Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755
| | | || || ||| ||||||| || || ||||| || ||||| ||||| |||
Sbjct 998958 TCGATTGTATCAGAGCTCTCGACCTCCAAGGTGATTGTTTTGCCAGTCAAGGTTTTAACA 998899
Query 48756 AAAATCTGCAT 48766
|||||||||||
Sbjct 998898 AAAATCTGCAT 998888
>seq31
Length=1547129
Score = 89.7 bits (98), Expect = 4e-13
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 9076 ATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCG 9135
|||| ||| ||| | ||| ||||||||||| ||| ||||| |||| ||| ||
Sbjct 999463 ATTTTCTCAAGAATCAGTTGTGCAATCCTGTCGCCCGCTTTCACTTCAAAATCTACATCA 999522
Query 9136 GAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCA 9195
|| || |||||||| | |||||| ||| ||| |||||||| |||| ||||| || |||
Sbjct 999523 GAGTGGTTGAACAGAATCACTCCTACGGGACCTCTGTAATCAGCATCTATCACGCCCGCA 999582
Query 9196 CCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239
|| || || || ||||| | |||| || || || |||||
Sbjct 999583 CCAACATCAATCGCATGCTTCAGAGCTAAGCCCGAACGCGGCGC 999626
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380932715903796
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |