Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4 109 4e-19 seq21 98.7 8e-16 seq14 96.9 3e-15 seq31 89.7 4e-13 >seq4 Length=5448771 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| ||||| | || |||||| ||| || || || |||||||| | ||| |||| Sbjct 199556 AGCCTTAACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGG 199615 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||||||| ||||| || || ||||| || |||| || | |||||| Sbjct 199616 CCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTCC 199675 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || ||| | | | || || ||| ||||| | || Sbjct 199676 TTGTCCTGAATCTTTGCCTTCACATTGTCGATGGTATCGGAGCTCTCAACCTCGAGAGTT 199735 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || |||||||| ||||| ||||| |||||||| Sbjct 199736 ATGGTCTTCCCCGTCAACGTTTTCACAAAGATCTGCAT 199773 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 ||||| ||| |||||| || || ||||| || | ||| ||||| | || |||| |||| Sbjct 205246 TGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGACCATCCTCCAGCTGC 205305 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 ||||| ||||| || || ||||| || |||| || | ||||||||||| |||||| Sbjct 205306 TTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGAATCTTG 205365 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | | || || ||| ||||| | || || || || || ||| Sbjct 205366 GCCTTCACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCTGTC 205425 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | ||||| || || |||||||| Sbjct 205426 AGCGTTTTCACGAAGATCTGCAT 205448 >seq21 Length=2013095 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || |||||||||||||||| ||| | | | || |||| |||| Sbjct 1809886 TGAAGAGTGGACTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTGC 1809827 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || ||||| | || ||||||| |||| ||||||||||| ||| || Sbjct 1809826 TTCCCTGCGAAAATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATTTTG 1809767 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 ||| ||| | | | || || ||||||||||| || || || || || ||| Sbjct 1809766 GCTTTCACATTGTCAATGGTGTCGGAGCTCTCCACCTCCAGAGTGATGGTCTTCCCAGTC 1809707 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 || ||||| ||||| || |||||| Sbjct 1809706 AAGGTTTTCACAAAGATTTGCATC 1809683 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | |||||| || | || ||| || || || || || || | Sbjct 1809682 CCTCCCCTGAGACGAAGCACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCGGCC 1809623 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | | | |||| |||| |||||| ||||| || ||||| | ||| || || | || Sbjct 1809622 AGAGTCCTACCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGG 1809563 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||| ||||| ||||| |||||| | | | || || ||| ||| Sbjct 1809562 ATTCCCTCTTTGTCTTGGATCTTAGCCTTTACATTGTCTATGGTGTCCGAACTCTCAACC 1809503 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| ||||| || ||||| || || || ||||||||||| Sbjct 1809502 TCCAGGGTAATGGTTTTCCCGGTCAACGTCTTGACGAAAATCTGCAT 1809456 >seq14 Length=2855554 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | | ||| | |||||| || || || || || || || |||||||| | Sbjct 999342 CCGCCTCGCAACCGAAGCACCAAGTGCAGTGTCGATTCCTTCTGTATGTTGTAATCTGCC 999283 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | | | | || || | |||||||| ||||| ||||| | |||||| || | || Sbjct 999282 AGAGTCCTACCATCTTCTAGTTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCAGGTGGG 999223 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| ||| ||| | | | || || |||||| Sbjct 999222 ATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTGTCAATGGTATCAGAGCTCTCCACT 999163 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| || ||||| || || ||||| || || ||||||||||||||| Sbjct 999162 TCCAAAGTGATCGTCTTGCCTGTCAAGGTCTTCACAAAAATCTGCATC 999115 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||||||| || || || ||||| || |||||||| | || | ||| | || || Sbjct 999553 CACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCTAAAGTTCTGCCATCTTC 999494 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | ||||| || || || |||| | |||||| || | || | |||||||||||| Sbjct 999493 GAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCTTG 999434 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||||||| || ||| | | | | || || |||||| |||| || || || || Sbjct 999433 AATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCCACTTCCAAAGTGATTGTCTT 999374 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||| ||||| ||||||||||||||| Sbjct 999373 GCCAGTCAAGGTTTTCACAAAAATCTGCATC 999343 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || || ||||| | ||| | | | |||| || | |||||||| ||||| Sbjct 999078 TCCTTCTGGATGTTATAATCTGCCAGAGTCCTACCGTCTTCGAGTTGCTTACCAGCAAAG 999019 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| | |||||| || | |||| ||||||||| || ||||| ||| ||| | Sbjct 999018 ATCAACCTCTGTTGGTCAGGTGGAATGCCCTCCTTATCTTGGATCTTGGCTTTCACATTA 998959 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||| ||||||| || || ||||| || ||||| ||||| ||| Sbjct 998958 TCGATTGTATCAGAGCTCTCGACCTCCAAGGTGATTGTTTTGCCAGTCAAGGTTTTAACA 998899 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 998898 AAAATCTGCAT 998888 >seq31 Length=1547129 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 9076 ATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCG 9135 |||| ||| ||| | ||| ||||||||||| ||| ||||| |||| ||| || Sbjct 999463 ATTTTCTCAAGAATCAGTTGTGCAATCCTGTCGCCCGCTTTCACTTCAAAATCTACATCA 999522 Query 9136 GAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCA 9195 || || |||||||| | |||||| ||| ||| |||||||| |||| ||||| || ||| Sbjct 999523 GAGTGGTTGAACAGAATCACTCCTACGGGACCTCTGTAATCAGCATCTATCACGCCCGCA 999582 Query 9196 CCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239 || || || || ||||| | |||| || || || ||||| Sbjct 999583 CCAACATCAATCGCATGCTTCAGAGCTAAGCCCGAACGCGGCGC 999626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380932715903796