Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq14 91.5 1e-13 seq21 84.2 2e-11 >seq14 Length=2855554 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| | || || ||||| || ||| ||| |||| ||| Sbjct 998432 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGTTCG 998491 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| ||| ||| || ||||||||| | || || || Sbjct 998492 GATACCATTGACAATGTAAAGGCAAAGATCCAAGATAAAGAGGGAATTCCTCCCGACCAG 998551 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || |||||||| || || || ||| | || ||| | ||| | |||||||| || Sbjct 998552 CAAAGGCTTATCTTCGCTGGTAAGCAACTCGAGGATGGTCGAACCCTTGCCGATTACAAT 998611 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || ||||||||||| || |||| | ||| | || || ||||| Sbjct 998612 ATCCAGAAGGAATCTACTCTTCATCTGGTGCTTAGACTTCGCGGTGGGAT 998661 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| ||||| | || ||||||||||||| | |||||||| || |||||| |||| Sbjct 999665 GACAAGGAGGGGATTCCTCCAGATCAACAGAGATTGATCTTTGCTGGGAAACAACTGGAG 999724 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 ||| |||| |||| ||||| |||||||| ||||| || || || ||| Sbjct 999725 GATGGGCGAACTTTGGCGGATTACAACATTCAGAAAGAGTCGACCCTCCAC 999775 >seq21 Length=2013095 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || || || || || |||||||||||| || || ||| Sbjct 1809456 ATGCAGATTTTCGTCAAGACGTTGACCGGGAAAACCATTACCCTGGAGGTTGAGAGTTCG 1809515 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| || ||| |||||||||||| | || ||| || Sbjct 1809516 GACACCATAGACAATGTAAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCAGACCAG 1809575 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || ||||| || || || || |||| || || ||| ||||||| |||||| Sbjct 1809576 CAGAGGCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGTAGGACTCTGGCCGACTATAAC 1809635 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || || || || ||||| ||||| |||| Sbjct 1809636 ATCCAGAAGGAGTCTACCTTGCACTTGGT 1809664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425399345778708