Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_020835.1
Length=47325
Score E
Sequences producing significant alignments: (Bits) Value
seq609 430 4e-116
seq424 416 9e-112
seq850 183 9e-42
seq8 172 2e-38
seq96 149 2e-31
seq76 131 5e-26
>seq609
Length=9483
Score = 430 bits (476), Expect = 4e-116
Identities = 602/840 (72%), Gaps = 10/840 (1%)
Strand=Plus/Minus
Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893
|||||| ||||| |||||||| ||||||||||| || ||||||||||| | ||||| ||
Sbjct 5154 AGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATT 5095
Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950
||| | ||| | | |||||||| ||| | || | ||| | | |||||
Sbjct 5094 AGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATSAACTACA-- 5037
Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010
||||||||||| ||||| ||||| | || |||||||||||| || || | || |||
Sbjct 5036 -GATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCGGT 4978
Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070
| ||| || | || ||||||||||| | ||||||||||| | | ||||||
Sbjct 4977 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTT 4918
Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130
|| |||||||| |||||||| | || ||||| || |||||||| || || ||||||||
Sbjct 4917 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATA 4858
Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190
|| ||||| ||||| || ||| | || || | || ||| ||| || || |||||
Sbjct 4857 AGTTTCTTCCTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 4798
Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250
|| || | ||||| || | || ||||||||| ||||| | || |||||
Sbjct 4797 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 4738
Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310
||| || | ||||| | ||| || || || ||||||||||| ||||| || || |||||
Sbjct 4737 TACACCAACTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 4678
Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370
||| | |||||| ||||||||||| || || ||||||||||| ||||| || || ||
Sbjct 4677 TACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCC 4618
Query 18371 TTGTCCAAAAGGATA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAA 18428
||| |||| || || | | ||||| || | || | |||||||| || || || |||||
Sbjct 4617 TTGACCAATTGGGTAGATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAATAT 4560
Query 18429 GCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATG 18488
|||||| |||||| || ||||||| || | ||||||||||||| | ||| ||||||
Sbjct 4559 GCAACAGCAATCCAAGGAMGCATACCCAGACGGAAACTAAGTTCCCACTCTCGACCCATG 4500
Query 18489 TAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 18548
||| ||| | || | | ||||| | ||||| || | ||| || || || || |||
Sbjct 4499 TAACATGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTAT 4440
Query 18549 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 18608
||||| || || | || ||||||||||| || | ||| ||||| | || || || |
Sbjct 4439 AACCATTCATCAACGGAAGCAGCTTCCCATATCGKGTAAAAGTGCAACCCAATAGCTGCA 4380
Query 18609 GATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668
|| | |||| || || || || || || |||||||| || |||| | ||| || |||
Sbjct 4379 GAAGTAGGGATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACA 4320
>seq424
Length=105662
Score = 416 bits (460), Expect = 9e-112
Identities = 568/795 (71%), Gaps = 4/795 (1%)
Strand=Plus/Minus
Query 18027 ACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGG 18086
|| ||||||||||| | ||||||||||| | | |||||| || |||||||| |||
Sbjct 95664 ACAGGCCAAGCAGCAAGGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGG 95605
Query 18087 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGG 18146
||||| | || ||||| || |||||||| || || |||||||| || ||||| |||||
Sbjct 95604 AAGATAAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGC 95545
Query 18147 CCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAA 18206
|| ||| | || || | || ||| ||| || || ||||| || || | |||
Sbjct 95544 CCGAATATGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 95485
Query 18207 GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCG 18266
|| || | || ||||||||| ||||| | | |||||||| || || ||| |
Sbjct 95484 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCYGCCGAATACACCAGCTACASCT 95425
Query 18267 AGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTG 18326
| ||| || || || ||||||||||| ||||| || | |||||||| | |||||| |||
Sbjct 95424 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGTCTGGAATACAATCATGAAGTTG 95365
Query 18327 AAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAA 18386
|||||||| || || ||||||||||| ||| | || || |||| |||| || ||
Sbjct 95364 AAAGTACCAGAGATTCCTAGAGGCATACCGTCAKAAAAGCTTCCTTKACCAATTGGGTAK 95305
Query 18387 A-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACG 18444
| ||||| || | || || ||||||| || || || ||||| |||||| |||||| |
Sbjct 95304 ATYAAGAAA-ACAGYAGTAG-CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAG 95247
Query 18445 GGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGA 18504
| | |||||| || | ||||||||||||| | || ||||||||| ||| | || |
Sbjct 95246 GACRCATACCCAGACGGAAACTAAGTTCCCACTCTCTACCCATGTAACATGCTACACCAA 95187
Query 18505 TGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGG 18564
| ||||| | ||||| || | ||| || || || || |||||||| || || | ||
Sbjct 95186 GTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACGG 95127
Query 18565 TTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTG 18624
||||||||||| || | ||| ||||| | || || || ||| | |||| || |
Sbjct 95126 AAGCAGCTTCCCATATCGRGTAAAAGTGCAACCCRATAGCTGCAGAAGTAGGGATAATGG 95067
Query 18625 CCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCAT 18684
| || || || || |||||||| || | || | ||| || ||||| |||| ||||||||
Sbjct 95066 CACCAGAAATAATATTGTTTCCGTAAARTAGAGATCCAGAAACAGGTTCACTAATACCAT 95007
Query 18685 CTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAA 18744
| || || | ||||||||||||| || | ||| | |||| | | || ||| || || |
Sbjct 95006 CAATATCTATTGGAGGAGCAGCAATGAAGGYAATAATAAATACAGAAGTTGCRGTCAATA 94947
Query 18745 GTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAA 18804
| ||||||||| | || |||||||| || | ||| || ||||| || || || || |
Sbjct 94946 AGGTAGGGATCATYAAAACACCAAACCATCCAATGTAAAGACGGTTTTTAGTGCTGGTTA 94887
Query 18805 CCCAGTCACATAAAC 18819
||||| ||| ||||
Sbjct 94886 TCCAGTTACAGAAAC 94872
Score = 376 bits (416), Expect = 8e-100
Identities = 536/757 (71%), Gaps = 4/757 (1%)
Strand=Plus/Plus
Query 18065 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 18124
|||||| || |||||||| |||||||| | || ||||| || |||| ||| || || ||
Sbjct 26693 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATAAGCAGCTACGAT 26752
Query 18125 ATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGT 18184
|||||| || ||||| ||||| || ||| | || | | || ||| ||| || |
Sbjct 26753 ATTATAAGTTTCTTCCTCTTGCCCGAATCTGTAAACTTCATTAGCAGATTCATTTTCTAT 26812
Query 18185 CGTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCC 18244
||||| | || | ||||| || | || ||||||||| ||||| | |
Sbjct 26813 GGTTTCCTTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCY 26872
Query 18245 ACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGC 18304
|||||||| || || ||||| | ||| || || || ||||||||||| ||||| || ||
Sbjct 26873 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGC 26932
Query 18305 TTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAA 18364
||||| || | |||||| ||||||||||| || || ||||||||||| ||||| ||
Sbjct 26933 CTGGAACACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAA 26992
Query 18365 ACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCG 18422
|| |||| |||| || || | | ||||| || | || || ||||||| || || ||
Sbjct 26993 GCTTCCTTTACCAATTGGGTAGATCAAGAAA-ACAGCAGTAG-CAGCTGCAACAGGAGCT 27050
Query 18423 GAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGT 18482
||||| |||||| |||||| || | |||||| || | ||||||||||||| | |||
Sbjct 27051 GAATATGCAACAGCAATCCAAGGACACATACCCAGACGGAAACTAAGTTCCCACTCTCGA 27110
Query 18483 CCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCG 18542
||||||||| ||| | || | | | ||| | ||||| || | ||| || || ||
Sbjct 27111 CCCATGTAACATGCTACACCAAGTAAGAWGTGTAGAACAATTAGCTCATAAGGACCACCA 27170
Query 18543 TTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATT 18602
|| |||||||| || || | | ||||||||||| || ||||| ||||| | || ||
Sbjct 27171 TTGTATAACCATTCATCAACGRAAGCAGCTTCCCATATCGGGTAAAAGTGCAACCCRATA 27230
Query 18603 GCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCT 18662
|| ||| | |||| || || || || || || |||||||| || | || | |||
Sbjct 27231 GCTGCAGAAGTAGGGATAATGGCACCAGAAATAATATTGTTTCCGTAAARTAGAGATCCA 27290
Query 18663 GAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAA 18722
| ||||| |||| ||||||||| || | || ||||||||||||| || ||||| | |
Sbjct 27291 KAAACAGGTTCACKAATACCATCAATAYCTACTGGAGGAGCAGCAATGAAGGCAATAATA 27350
Query 18723 AATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAG 18782
||| | | || ||| || || | | ||||||||| | || |||||||| || | ||
Sbjct 27351 AATACAGAAGTTGCRGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATRTAA 27410
Query 18783 AGGCGGTTGTTTGTACTCGTAACCCAGTCACATAAAC 18819
|| ||| | || || || | ||||| ||| ||||
Sbjct 27411 AGAYRGTTTTCAGTGCTGGTTATCCAGTTACAGAAAC 27447
>seq850
Length=2209
Score = 183 bits (202), Expect = 9e-42
Identities = 226/310 (73%), Gaps = 0/310 (0%)
Strand=Plus/Minus
Query 18510 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 18569
||||| | ||||| || | ||| || || || || |||||||| || || | || |||
Sbjct 335 AAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACGGAAGCA 276
Query 18570 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 18629
|||||||| || ||||| ||||| | || || || ||| | |||| || || ||
Sbjct 275 GCTTCCCATATCGGGTAAAAGTGCAACCCAATAGCTGCAGAAGTAGGGATAATGGCACCA 216
Query 18630 GATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATG 18689
|| || || |||||||| || |||| | ||| || ||||| |||||||||||||| ||
Sbjct 215 GAWATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATA 156
Query 18690 TCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCA 18749
|| || ||||||||||||| || ||||| | |||| | | || |||||| || | | |
Sbjct 155 TCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAGTTGCGGTCAATAAGGTA 96
Query 18750 GGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAG 18809
|||||||| | || |||||||| || | || || ||||| | || || || | ||||
Sbjct 95 GGGATCATCAAAACACCAAACCATCCAATATAAAGACGGTTTTCAGTGCTGGTTATCCAG 36
Query 18810 TCACATAAAC 18819
| ||| ||||
Sbjct 35 TTACAGAAAC 26
>seq8
Length=4047118
Score = 172 bits (190), Expect = 2e-38
Identities = 221/305 (72%), Gaps = 0/305 (0%)
Strand=Plus/Minus
Query 18468 AGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGT 18527
|||||||| | ||| ||||||||| ||| | || | | ||||| | ||||| ||
Sbjct 2332246 AGTTCCCACTCTCGACCCATGTAACATGCTACACCAAGTAAGAAGTGTAGAACAATTAGC 2332187
Query 18528 TGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAG 18587
| ||| || || || || |||||||| || || | || ||||||||||| || |||||
Sbjct 2332186 TCATAAGGACCACCATTGTATAACCATTCATCAACGGAAGCAGCTTCCCATATCGGGTAA 2332127
Query 18588 AAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCA 18647
||||| | || || || ||| | |||| || || || || || || ||||||||
Sbjct 2332126 AAGTGCAACCCAATAGCTGCAGAAGTAGGGATAATGGCACCAGAAATAATATTGTTTCCG 2332067
Query 18648 TAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCA 18707
|| |||| | ||| || ||||| |||||||||| ||| || || || ||||||||||||
Sbjct 2332066 TAAAGTAGAGATCCAGAAACAGGTTCACGAATACTATCAATATCTACTGGAGGAGCAGCA 2332007
Query 18708 ACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCA 18767
| || |||| | |||| | | || |||||| || | | ||||||||| | || |||
Sbjct 2332006 ATGAAGACAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCA 2331947
Query 18768 AACCA 18772
|||||
Sbjct 2331946 AACCA 2331942
>seq96
Length=850568
Score = 149 bits (164), Expect = 2e-31
Identities = 185/248 (75%), Gaps = 4/248 (2%)
Strand=Plus/Plus
Query 18347 AGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAG 18404
||||||||| ||||| || || ||||| |||| || || | | ||||| || | || ||
Sbjct 64587 AGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAA-ACAGCAGTAG 64645
Query 18405 GCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAA 18464
||||||| || || || ||||| |||||| |||||| || |||||||| || | ||
Sbjct 64646 -CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 64704
Query 18465 CTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATG 18524
||||||||||| | ||| ||||||||| ||| | || | | ||||| | |||||
Sbjct 64705 CTAAGTTCCCACTCTCGACCCATGTAACATGCTACACCAAGTAAGAAGTGTAGAACAATT 64764
Query 18525 AGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 18584
|| | ||| || || || || |||||||| || || | || ||||||||||| || |||
Sbjct 64765 AGCTCATAAGGACCACCATTGTATAACCATTCATCAACGGAAGCAGCTTCCCATATCGGG 64824
Query 18585 TAGAAGTG 18592
|| |||||
Sbjct 64825 TAAAAGTG 64832
>seq76
Length=1023076
Score = 131 bits (144), Expect = 5e-26
Identities = 164/224 (73%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893
|||||| ||||| |||||||| ||||||||||| || ||||||||||| | ||||| ||
Sbjct 1004548 AGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATT 1004489
Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950
||| | ||| | | |||||||| ||| | || | ||| | | | |||||
Sbjct 1004488 AGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACA-- 1004431
Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010
||||||||||| ||||| ||||| | || |||||||||||| || || | || |||
Sbjct 1004430 -GATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCGGT 1004372
Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTA 18054
| ||| || | || ||||||||||| | |||||||||||
Sbjct 1004371 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTA 1004328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151316509654888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |