Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq609 430 4e-116 seq424 416 9e-112 seq850 183 9e-42 seq8 172 2e-38 seq96 149 2e-31 seq76 131 5e-26 >seq609 Length=9483 Score = 430 bits (476), Expect = 4e-116 Identities = 602/840 (72%), Gaps = 10/840 (1%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 |||||| ||||| |||||||| ||||||||||| || ||||||||||| | ||||| || Sbjct 5154 AGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATT 5095 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| | | |||||||| ||| | || | ||| | | ||||| Sbjct 5094 AGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATSAACTACA-- 5037 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||| ||||| | || |||||||||||| || || | || ||| Sbjct 5036 -GATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCGGT 4978 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || ||||||||||| | ||||||||||| | | |||||| Sbjct 4977 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTT 4918 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || |||||||| || || |||||||| Sbjct 4917 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATA 4858 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| || ||| | || || | || ||| ||| || || ||||| Sbjct 4857 AGTTTCTTCCTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 4798 Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 || || | ||||| || | || ||||||||| ||||| | || ||||| Sbjct 4797 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 4738 Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 ||| || | ||||| | ||| || || || ||||||||||| ||||| || || ||||| Sbjct 4737 TACACCAACTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 4678 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 ||| | |||||| ||||||||||| || || ||||||||||| ||||| || || || Sbjct 4677 TACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCC 4618 Query 18371 TTGTCCAAAAGGATA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAA 18428 ||| |||| || || | | ||||| || | || | |||||||| || || || ||||| Sbjct 4617 TTGACCAATTGGGTAGATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAATAT 4560 Query 18429 GCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATG 18488 |||||| |||||| || ||||||| || | ||||||||||||| | ||| |||||| Sbjct 4559 GCAACAGCAATCCAAGGAMGCATACCCAGACGGAAACTAAGTTCCCACTCTCGACCCATG 4500 Query 18489 TAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 18548 ||| ||| | || | | ||||| | ||||| || | ||| || || || || ||| Sbjct 4499 TAACATGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTAT 4440 Query 18549 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 18608 ||||| || || | || ||||||||||| || | ||| ||||| | || || || | Sbjct 4439 AACCATTCATCAACGGAAGCAGCTTCCCATATCGKGTAAAAGTGCAACCCAATAGCTGCA 4380 Query 18609 GATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668 || | |||| || || || || || || |||||||| || |||| | ||| || ||| Sbjct 4379 GAAGTAGGGATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACA 4320 >seq424 Length=105662 Score = 416 bits (460), Expect = 9e-112 Identities = 568/795 (71%), Gaps = 4/795 (1%) Strand=Plus/Minus Query 18027 ACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGG 18086 || ||||||||||| | ||||||||||| | | |||||| || |||||||| ||| Sbjct 95664 ACAGGCCAAGCAGCAAGGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGG 95605 Query 18087 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGG 18146 ||||| | || ||||| || |||||||| || || |||||||| || ||||| ||||| Sbjct 95604 AAGATAAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGC 95545 Query 18147 CCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAA 18206 || ||| | || || | || ||| ||| || || ||||| || || | ||| Sbjct 95544 CCGAATATGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 95485 Query 18207 GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCG 18266 || || | || ||||||||| ||||| | | |||||||| || || ||| | Sbjct 95484 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCYGCCGAATACACCAGCTACASCT 95425 Query 18267 AGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTG 18326 | ||| || || || ||||||||||| ||||| || | |||||||| | |||||| ||| Sbjct 95424 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGTCTGGAATACAATCATGAAGTTG 95365 Query 18327 AAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAA 18386 |||||||| || || ||||||||||| ||| | || || |||| |||| || || Sbjct 95364 AAAGTACCAGAGATTCCTAGAGGCATACCGTCAKAAAAGCTTCCTTKACCAATTGGGTAK 95305 Query 18387 A-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACG 18444 | ||||| || | || || ||||||| || || || ||||| |||||| |||||| | Sbjct 95304 ATYAAGAAA-ACAGYAGTAG-CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAG 95247 Query 18445 GGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGA 18504 | | |||||| || | ||||||||||||| | || ||||||||| ||| | || | Sbjct 95246 GACRCATACCCAGACGGAAACTAAGTTCCCACTCTCTACCCATGTAACATGCTACACCAA 95187 Query 18505 TGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGG 18564 | ||||| | ||||| || | ||| || || || || |||||||| || || | || Sbjct 95186 GTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACGG 95127 Query 18565 TTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTG 18624 ||||||||||| || | ||| ||||| | || || || ||| | |||| || | Sbjct 95126 AAGCAGCTTCCCATATCGRGTAAAAGTGCAACCCRATAGCTGCAGAAGTAGGGATAATGG 95067 Query 18625 CCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCAT 18684 | || || || || |||||||| || | || | ||| || ||||| |||| |||||||| Sbjct 95066 CACCAGAAATAATATTGTTTCCGTAAARTAGAGATCCAGAAACAGGTTCACTAATACCAT 95007 Query 18685 CTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAA 18744 | || || | ||||||||||||| || | ||| | |||| | | || ||| || || | Sbjct 95006 CAATATCTATTGGAGGAGCAGCAATGAAGGYAATAATAAATACAGAAGTTGCRGTCAATA 94947 Query 18745 GTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAA 18804 | ||||||||| | || |||||||| || | ||| || ||||| || || || || | Sbjct 94946 AGGTAGGGATCATYAAAACACCAAACCATCCAATGTAAAGACGGTTTTTAGTGCTGGTTA 94887 Query 18805 CCCAGTCACATAAAC 18819 ||||| ||| |||| Sbjct 94886 TCCAGTTACAGAAAC 94872 Score = 376 bits (416), Expect = 8e-100 Identities = 536/757 (71%), Gaps = 4/757 (1%) Strand=Plus/Plus Query 18065 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 18124 |||||| || |||||||| |||||||| | || ||||| || |||| ||| || || || Sbjct 26693 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATAAGCAGCTACGAT 26752 Query 18125 ATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGT 18184 |||||| || ||||| ||||| || ||| | || | | || ||| ||| || | Sbjct 26753 ATTATAAGTTTCTTCCTCTTGCCCGAATCTGTAAACTTCATTAGCAGATTCATTTTCTAT 26812 Query 18185 CGTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCC 18244 ||||| | || | ||||| || | || ||||||||| ||||| | | Sbjct 26813 GGTTTCCTTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCY 26872 Query 18245 ACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGC 18304 |||||||| || || ||||| | ||| || || || ||||||||||| ||||| || || Sbjct 26873 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGC 26932 Query 18305 TTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAA 18364 ||||| || | |||||| ||||||||||| || || ||||||||||| ||||| || Sbjct 26933 CTGGAACACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAA 26992 Query 18365 ACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCG 18422 || |||| |||| || || | | ||||| || | || || ||||||| || || || Sbjct 26993 GCTTCCTTTACCAATTGGGTAGATCAAGAAA-ACAGCAGTAG-CAGCTGCAACAGGAGCT 27050 Query 18423 GAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGT 18482 ||||| |||||| |||||| || | |||||| || | ||||||||||||| | ||| Sbjct 27051 GAATATGCAACAGCAATCCAAGGACACATACCCAGACGGAAACTAAGTTCCCACTCTCGA 27110 Query 18483 CCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCG 18542 ||||||||| ||| | || | | | ||| | ||||| || | ||| || || || Sbjct 27111 CCCATGTAACATGCTACACCAAGTAAGAWGTGTAGAACAATTAGCTCATAAGGACCACCA 27170 Query 18543 TTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATT 18602 || |||||||| || || | | ||||||||||| || ||||| ||||| | || || Sbjct 27171 TTGTATAACCATTCATCAACGRAAGCAGCTTCCCATATCGGGTAAAAGTGCAACCCRATA 27230 Query 18603 GCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCT 18662 || ||| | |||| || || || || || || |||||||| || | || | ||| Sbjct 27231 GCTGCAGAAGTAGGGATAATGGCACCAGAAATAATATTGTTTCCGTAAARTAGAGATCCA 27290 Query 18663 GAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAA 18722 | ||||| |||| ||||||||| || | || ||||||||||||| || ||||| | | Sbjct 27291 KAAACAGGTTCACKAATACCATCAATAYCTACTGGAGGAGCAGCAATGAAGGCAATAATA 27350 Query 18723 AATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAG 18782 ||| | | || ||| || || | | ||||||||| | || |||||||| || | || Sbjct 27351 AATACAGAAGTTGCRGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATRTAA 27410 Query 18783 AGGCGGTTGTTTGTACTCGTAACCCAGTCACATAAAC 18819 || ||| | || || || | ||||| ||| |||| Sbjct 27411 AGAYRGTTTTCAGTGCTGGTTATCCAGTTACAGAAAC 27447 >seq850 Length=2209 Score = 183 bits (202), Expect = 9e-42 Identities = 226/310 (73%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 18510 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 18569 ||||| | ||||| || | ||| || || || || |||||||| || || | || ||| Sbjct 335 AAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACGGAAGCA 276 Query 18570 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 18629 |||||||| || ||||| ||||| | || || || ||| | |||| || || || Sbjct 275 GCTTCCCATATCGGGTAAAAGTGCAACCCAATAGCTGCAGAAGTAGGGATAATGGCACCA 216 Query 18630 GATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATG 18689 || || || |||||||| || |||| | ||| || ||||| |||||||||||||| || Sbjct 215 GAWATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATA 156 Query 18690 TCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCA 18749 || || ||||||||||||| || ||||| | |||| | | || |||||| || | | | Sbjct 155 TCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAGTTGCGGTCAATAAGGTA 96 Query 18750 GGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAG 18809 |||||||| | || |||||||| || | || || ||||| | || || || | |||| Sbjct 95 GGGATCATCAAAACACCAAACCATCCAATATAAAGACGGTTTTCAGTGCTGGTTATCCAG 36 Query 18810 TCACATAAAC 18819 | ||| |||| Sbjct 35 TTACAGAAAC 26 >seq8 Length=4047118 Score = 172 bits (190), Expect = 2e-38 Identities = 221/305 (72%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 18468 AGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGT 18527 |||||||| | ||| ||||||||| ||| | || | | ||||| | ||||| || Sbjct 2332246 AGTTCCCACTCTCGACCCATGTAACATGCTACACCAAGTAAGAAGTGTAGAACAATTAGC 2332187 Query 18528 TGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAG 18587 | ||| || || || || |||||||| || || | || ||||||||||| || ||||| Sbjct 2332186 TCATAAGGACCACCATTGTATAACCATTCATCAACGGAAGCAGCTTCCCATATCGGGTAA 2332127 Query 18588 AAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCA 18647 ||||| | || || || ||| | |||| || || || || || || |||||||| Sbjct 2332126 AAGTGCAACCCAATAGCTGCAGAAGTAGGGATAATGGCACCAGAAATAATATTGTTTCCG 2332067 Query 18648 TAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCA 18707 || |||| | ||| || ||||| |||||||||| ||| || || || |||||||||||| Sbjct 2332066 TAAAGTAGAGATCCAGAAACAGGTTCACGAATACTATCAATATCTACTGGAGGAGCAGCA 2332007 Query 18708 ACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCA 18767 | || |||| | |||| | | || |||||| || | | ||||||||| | || ||| Sbjct 2332006 ATGAAGACAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCA 2331947 Query 18768 AACCA 18772 ||||| Sbjct 2331946 AACCA 2331942 >seq96 Length=850568 Score = 149 bits (164), Expect = 2e-31 Identities = 185/248 (75%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 18347 AGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAG 18404 ||||||||| ||||| || || ||||| |||| || || | | ||||| || | || || Sbjct 64587 AGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAA-ACAGCAGTAG 64645 Query 18405 GCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAA 18464 ||||||| || || || ||||| |||||| |||||| || |||||||| || | || Sbjct 64646 -CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 64704 Query 18465 CTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATG 18524 ||||||||||| | ||| ||||||||| ||| | || | | ||||| | ||||| Sbjct 64705 CTAAGTTCCCACTCTCGACCCATGTAACATGCTACACCAAGTAAGAAGTGTAGAACAATT 64764 Query 18525 AGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 18584 || | ||| || || || || |||||||| || || | || ||||||||||| || ||| Sbjct 64765 AGCTCATAAGGACCACCATTGTATAACCATTCATCAACGGAAGCAGCTTCCCATATCGGG 64824 Query 18585 TAGAAGTG 18592 || ||||| Sbjct 64825 TAAAAGTG 64832 >seq76 Length=1023076 Score = 131 bits (144), Expect = 5e-26 Identities = 164/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 |||||| ||||| |||||||| ||||||||||| || ||||||||||| | ||||| || Sbjct 1004548 AGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATT 1004489 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| | | |||||||| ||| | || | ||| | | | ||||| Sbjct 1004488 AGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACA-- 1004431 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||| ||||| | || |||||||||||| || || | || ||| Sbjct 1004430 -GATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCGGT 1004372 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTA 18054 | ||| || | || ||||||||||| | ||||||||||| Sbjct 1004371 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTA 1004328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151316509654888