Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 136 5e-27 seq49 114 2e-20 seq60 107 2e-18 seq11 93.3 5e-14 seq5 84.2 3e-11 >seq1 Length=7185522 Score = 136 bits (150), Expect = 5e-27 Identities = 222/317 (70%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCT 175334 ||| ||||| ||||| ||| ||| |||| || || ||||| |||||||| || Sbjct 6703506 TGGAGCCAAAATCCCAAAAGGGTGCCTCCTCGTTGGACCTCCTGGTACCGGAAAGACTCT 6703565 Query 175335 CCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAA 175394 || ||||| ||| | || || || | ||| |||||| || ||| ||||| || | Sbjct 6703566 TCTGGCCCGGGCCGTGGCCGGAGAGGCTGGTGTGCCATTCTTCTCGTGTGCTGCCTCAGA 6703625 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 ||||| || ||||||| ||||||||||| || || | || | || || | || Sbjct 6703626 GTTTGTAGAACTGTTTGTGGGTGTGGGTGCTTCGAGAGTGAGGGACTTGTTCGAGAAGGC 6703685 Query 175455 CC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAAC 175513 | | ||| | || || |||||||||||||||||||||||||| ||||| | || Sbjct 6703686 CAAGTCCAAAGCC-CCTTGCATTGTCTTCATTGATGAGATTGATGCTGTGGGAAGACAGA 6703744 Query 175514 GCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | | |||||| | | |||||||||||||| ||||| || ||||| || | | Sbjct 6703745 GAGGGGCTGGTCTTGGAGGTGGGAATGACGAGAGAGAGCAAACGATCAATCAGCTCTTGA 6703804 Query 175574 CCGAGATGGATGGCTTT 175590 | ||||||||||||||| Sbjct 6703805 CTGAGATGGATGGCTTT 6703821 >seq49 Length=1248075 Score = 114 bits (126), Expect = 2e-20 Identities = 280/421 (67%), Gaps = 10/421 (2%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | ||||| ||||| ||| | || ||||| | || ||| || || ||| Sbjct 901536 GAGGTGGTGGAGTTTCTAAAGAAGCCTGAGAGGTTCACTGCTGTTGGGGCTCGCATTCCC 901477 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | ||||||| ||| ||||| || || ||||| || || ||| ||||| Sbjct 901476 AAAGGTGTTCTTCTCGTTGGTCCTCCAGGAACTGGGAAGACTCTGCTAGCCAAGGCCATT 901417 Query 175351 GCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || |||||| || ||||||||| || || | || | | | ||||| ||||||| Sbjct 901416 GCAGGTGAAGCAGGTGTCCCATTTTTCTCCATT--TCAGGTTCCGAGTTTGTTGAGATGT 901359 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||| ||| | ||||| | ||||| |||||||| | | ||| |||||| | Sbjct 901358 TTGTCGGTATTGGTGCTTCTCGTGTTCGTGATCTCTTCAAGAAGGCCAAGGAAAATGCTC 901299 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TG 175525 | || ||||| || ||||||| |||||||| || || ||| | | |||| || Sbjct 901298 CTTGCATTGTGTTTGTTGATGAAATTGATGCTGTTGGACGTCAAAGAGGTACTGGAATTG 901239 Query 175526 GTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATG 175585 || | ||||| || |||||||| || | || || || || || || ||||||| Sbjct 901238 GT---GGTGGGAATGATGAAAGAGAACAGACCCTCAACCAGCTTCTAACTGAAATGGATG 901182 Query 175586 GCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTG 175645 | ||||| | ||||||||| | || ||||| ||||| || | | || || |||| Sbjct 901181 GGTTTGAGGGAAACACTGGCATTATTGTAATTGCTGCCACAAACAGGGCAGACATTCTTG 901122 Query 175646 A 175646 | Sbjct 901121 A 901121 >seq60 Length=1131370 Score = 107 bits (118), Expect = 2e-18 Identities = 197/285 (69%), Gaps = 8/285 (3%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||||||||||||||||| ||||| | |||||||| || || | | ||| Sbjct 1083285 TTTGTTGAGATGTTTGTTGGTGTTGGTGCATCTCGAGTTCGCGACCTATTCAAGAAGGCC 1083226 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGT-GGGCAAGCAACG 175514 || ||| || || ||||| || ||||||| ||||||||||| |||| | ||| | Sbjct 1083225 AAAGAGAATGCTCCTTGCATTGTGTTTGTTGATGAAATTGATGCGGTCGGGCGA-CAAAG 1083167 Query 175515 CAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACT 175571 | ||||| |||| || ||||| || |||||||| ||| | || ||||| | Sbjct 1083166 AGGAGCTGGGATTGGT---GGAGGGAATGATGAAAGAGAACAGACACTCAACCAACTTTT 1083110 Query 175572 CACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCG 175631 ||||| |||||||| || || | | || || || | || ||||| ||||| || | Sbjct 1083109 AACCGAAATGGATGGTTTCGAGGGTAATACCGGTATCATTGTAATTGCTGCCACCAACAG 1083050 Query 175632 CGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 | ||||| || || ||| | || | || || |||||||| Sbjct 1083049 GGCAGATATTCTCGACTCTGCCTTACTAAGACCCGGACGTTTTGA 1083005 >seq11 Length=3405507 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||||| || | |||| |||| |||||||| | ||||| || ||| |||||||||| Sbjct 2720135 TTCTGCGCCATATTTTGGCTGAAAAAGCGGGGATTGATGCCGGGACTAACCTTCTCAAAT 2720194 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 ||||| |||||| |||||||||| || ||| || ||||| Sbjct 2720195 GAACTAATTTCCAGAGATGAGGGCCTTCACTGTGACTTTGC 2720235 >seq5 Length=5307744 Score = 84.2 bits (92), Expect = 3e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 76130 GTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGA 76189 ||||| | |||||| ||| | ||||| |||| ||||| ||||||||||| | | Sbjct 4278105 GTTACAACAAATCTGAACAAGATAATTGATGTCAATTACTATCCTGTTGAGACTGC-CAA 4278047 Query 76190 AAG-TCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGAT 76243 ||| || ||| | ||||||||||||||||| | || ||||||||||| |||||| Sbjct 4278046 AAGATCAAATCTAAGACACAGACCTATTGGTATTGGGGTTCAAGGTCTTGCGGAT 4277992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596561755109760