Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq1 136 5e-27
seq49 114 2e-20
seq60 107 2e-18
seq11 93.3 5e-14
seq5 84.2 3e-11
>seq1
Length=7185522
Score = 136 bits (150), Expect = 5e-27
Identities = 222/317 (70%), Gaps = 2/317 (1%)
Strand=Plus/Plus
Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCT 175334
||| ||||| ||||| ||| ||| |||| || || ||||| |||||||| ||
Sbjct 6703506 TGGAGCCAAAATCCCAAAAGGGTGCCTCCTCGTTGGACCTCCTGGTACCGGAAAGACTCT 6703565
Query 175335 CCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAA 175394
|| ||||| ||| | || || || | ||| |||||| || ||| ||||| || |
Sbjct 6703566 TCTGGCCCGGGCCGTGGCCGGAGAGGCTGGTGTGCCATTCTTCTCGTGTGCTGCCTCAGA 6703625
Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454
||||| || ||||||| ||||||||||| || || | || | || || | ||
Sbjct 6703626 GTTTGTAGAACTGTTTGTGGGTGTGGGTGCTTCGAGAGTGAGGGACTTGTTCGAGAAGGC 6703685
Query 175455 CC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAAC 175513
| | ||| | || || |||||||||||||||||||||||||| ||||| | ||
Sbjct 6703686 CAAGTCCAAAGCC-CCTTGCATTGTCTTCATTGATGAGATTGATGCTGTGGGAAGACAGA 6703744
Query 175514 GCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573
| | |||||| | | |||||||||||||| ||||| || ||||| || | |
Sbjct 6703745 GAGGGGCTGGTCTTGGAGGTGGGAATGACGAGAGAGAGCAAACGATCAATCAGCTCTTGA 6703804
Query 175574 CCGAGATGGATGGCTTT 175590
| |||||||||||||||
Sbjct 6703805 CTGAGATGGATGGCTTT 6703821
>seq49
Length=1248075
Score = 114 bits (126), Expect = 2e-20
Identities = 280/421 (67%), Gaps = 10/421 (2%)
Strand=Plus/Minus
Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290
||| | ||||| ||||| ||| | || ||||| | || ||| || || |||
Sbjct 901536 GAGGTGGTGGAGTTTCTAAAGAAGCCTGAGAGGTTCACTGCTGTTGGGGCTCGCATTCCC 901477
Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350
||| | ||||||| ||| ||||| || || ||||| || || ||| |||||
Sbjct 901476 AAAGGTGTTCTTCTCGTTGGTCCTCCAGGAACTGGGAAGACTCTGCTAGCCAAGGCCATT 901417
Query 175351 GCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408
|| |||||| || ||||||||| || || | || | | | ||||| |||||||
Sbjct 901416 GCAGGTGAAGCAGGTGTCCCATTTTTCTCCATT--TCAGGTTCCGAGTTTGTTGAGATGT 901359
Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468
|||| ||| | ||||| | ||||| |||||||| | | ||| |||||| |
Sbjct 901358 TTGTCGGTATTGGTGCTTCTCGTGTTCGTGATCTCTTCAAGAAGGCCAAGGAAAATGCTC 901299
Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TG 175525
| || ||||| || ||||||| |||||||| || || ||| | | |||| ||
Sbjct 901298 CTTGCATTGTGTTTGTTGATGAAATTGATGCTGTTGGACGTCAAAGAGGTACTGGAATTG 901239
Query 175526 GTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATG 175585
|| | ||||| || |||||||| || | || || || || || || |||||||
Sbjct 901238 GT---GGTGGGAATGATGAAAGAGAACAGACCCTCAACCAGCTTCTAACTGAAATGGATG 901182
Query 175586 GCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTG 175645
| ||||| | ||||||||| | || ||||| ||||| || | | || || ||||
Sbjct 901181 GGTTTGAGGGAAACACTGGCATTATTGTAATTGCTGCCACAAACAGGGCAGACATTCTTG 901122
Query 175646 A 175646
|
Sbjct 901121 A 901121
>seq60
Length=1131370
Score = 107 bits (118), Expect = 2e-18
Identities = 197/285 (69%), Gaps = 8/285 (3%)
Strand=Plus/Minus
Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455
||||| ||||||||||||||||| ||||| | |||||||| || || | | |||
Sbjct 1083285 TTTGTTGAGATGTTTGTTGGTGTTGGTGCATCTCGAGTTCGCGACCTATTCAAGAAGGCC 1083226
Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGT-GGGCAAGCAACG 175514
|| ||| || || ||||| || ||||||| ||||||||||| |||| | ||| |
Sbjct 1083225 AAAGAGAATGCTCCTTGCATTGTGTTTGTTGATGAAATTGATGCGGTCGGGCGA-CAAAG 1083167
Query 175515 CAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACT 175571
| ||||| |||| || ||||| || |||||||| ||| | || ||||| |
Sbjct 1083166 AGGAGCTGGGATTGGT---GGAGGGAATGATGAAAGAGAACAGACACTCAACCAACTTTT 1083110
Query 175572 CACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCG 175631
||||| |||||||| || || | | || || || | || ||||| ||||| || |
Sbjct 1083109 AACCGAAATGGATGGTTTCGAGGGTAATACCGGTATCATTGTAATTGCTGCCACCAACAG 1083050
Query 175632 CGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676
| ||||| || || ||| | || | || || ||||||||
Sbjct 1083049 GGCAGATATTCTCGACTCTGCCTTACTAAGACCCGGACGTTTTGA 1083005
>seq11
Length=3405507
Score = 93.3 bits (102), Expect = 5e-14
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187
|||||||| || | |||| |||| |||||||| | ||||| || ||| ||||||||||
Sbjct 2720135 TTCTGCGCCATATTTTGGCTGAAAAAGCGGGGATTGATGCCGGGACTAACCTTCTCAAAT 2720194
Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228
||||| |||||| |||||||||| || ||| || |||||
Sbjct 2720195 GAACTAATTTCCAGAGATGAGGGCCTTCACTGTGACTTTGC 2720235
>seq5
Length=5307744
Score = 84.2 bits (92), Expect = 3e-11
Identities = 89/115 (77%), Gaps = 2/115 (2%)
Strand=Plus/Minus
Query 76130 GTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGA 76189
||||| | |||||| ||| | ||||| |||| ||||| ||||||||||| | |
Sbjct 4278105 GTTACAACAAATCTGAACAAGATAATTGATGTCAATTACTATCCTGTTGAGACTGC-CAA 4278047
Query 76190 AAG-TCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGAT 76243
||| || ||| | ||||||||||||||||| | || ||||||||||| ||||||
Sbjct 4278046 AAGATCAAATCTAAGACACAGACCTATTGGTATTGGGGTTCAAGGTCTTGCGGAT 4277992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596561755109760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |