Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq609 408 1e-109 seq424 374 3e-99 seq850 167 7e-37 seq76 152 2e-32 seq8 147 6e-31 seq96 105 2e-18 >seq609 Length=9483 Score = 408 bits (452), Expect = 1e-109 Identities = 589/833 (71%), Gaps = 0/833 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||||||| || || ||||| ||||||||||| || ||||||||||| | || || ||| Sbjct 5153 GCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 5094 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | || ||||| || Sbjct 5093 GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATSAACTACAGAT 5034 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||| ||| || ||||| |||| ||||| | || || | | Sbjct 5033 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCGGTGAAC 4974 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| || |||||||| | |||||| || || ||| Sbjct 4973 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTTGAAA 4914 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || ||||| || |||||||| || Sbjct 4913 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 4854 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| |||||||| || | || || | ||| || | | ||||| ||||| Sbjct 4853 TCTTCCTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 4794 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | ||||| ||||| || ||||||||| ||| || | || ||||| || Sbjct 4793 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 4734 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||| | ||||| ||| || ||||||||||| || || || || || || |||||||| Sbjct 4733 CCAACTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 4674 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||| ||||| |||||||||||||| || |||||||| || ||| ||| || ||||| Sbjct 4673 ATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGA 4614 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | || || | ||||| || || ||| || | | || |||| |||||||||| Sbjct 4613 CCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 4554 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| || ||| || || | | || |||||||||| || || || | Sbjct 4553 GCAATCCAAGGAMGCATACCCAGACGGAAACTAAGTTCCCACTCTCGACCCATGTAACAT 4494 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| || | ||| || || |||||||||| ||| Sbjct 4493 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCAT 4434 Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656 || || | | |||||||||| |||| |||||| || | || || || ||| | Sbjct 4433 TCATCAACGGAAGCAGCTTCCCATATCGKGTAAAAGTGCAACCCAATAGCTGCAGAAGTA 4374 Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAAC 26709 |||| | || || || || |||||||||||||| | || || || ||||| Sbjct 4373 GGGATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAAC 4321 >seq424 Length=105662 Score = 374 bits (414), Expect = 3e-99 Identities = 580/831 (70%), Gaps = 2/831 (0%) Strand=Plus/Minus Query 26030 ATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAG 26089 || |||| ||||| | || || | ||| || || || || ||||||| |||||| ||| Sbjct 95703 ATAGTGCTAATACCTAAAGCGGTGAACCAGATACCTACTACAGGCCAAGCAGCAAGGAAG 95644 Query 26090 AAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTAC 26149 ||||| | |||||| || || ||||| ||||| || || || |||| ||||| || Sbjct 95643 AAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAGATAAATCGGCCAAAATAA 95584 Query 26150 CCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTC 26209 || || ||||| || |||||||| || ||||| |||||||| || | || || | ||| Sbjct 95583 CCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGCCCGAATATGTAACCTTCATTA 95524 Query 26210 TGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATA 26269 || | | ||||| ||||| || | ||||| ||||| || |||||| Sbjct 95523 GCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATA 95464 Query 26270 GCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATG 26329 ||| ||| || | | ||||| || ||||| ||| | ||| || ||||||||||| Sbjct 95463 GCACTGAATAGGGAGCYGCCGAATACACCAGCTACASCTAACATGTGAAATGGGTGCATA 95404 Query 26330 AGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGA 26389 || || || || || | |||||||| | ||| ||||| |||||||||||||| || ||| Sbjct 95403 AGGATGTTGTGCTCAGTCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGA 95344 Query 26390 GGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCT 26449 ||||| || ||| ||| || |||| || | || || | ||||| || | ||| Sbjct 95343 GGCATACCGTCAKAAAAGCTTCCTTKACCAATTGGGTAKATYAAGAAAACAGYAGTAGCA 95284 Query 26450 GCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGAT 26509 || | | || |||| |||||||||| ||||| || | ||| || || | | || Sbjct 95283 GCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACRCATACCCAGACGGAAACTA 95224 Query 26510 AGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGT 26569 |||||||||| ||| || || |||||| || | ||||||||| | | ||| || Sbjct 95223 AGTTCCCACTCTCTACCCATGTAACATGCTACACCAAGTAAGAAGTGTAGAACAATTAGC 95164 Query 26570 TGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAA 26629 | ||| || || |||||||||| ||| || || | | |||||||||| |||| |||| Sbjct 95163 TCATAAGGACCACCATTGTATAACCATTCATCAACGGAAGCAGCTTCCCATATCGRGTAA 95104 Query 26630 AAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCG 26689 || || | || || || ||| | |||| | || || || || |||||||||||| Sbjct 95103 AAGTGCAACCCRATAGCTGCAGAAGTAGGGATAATGGCACCAGAAATAATATTGTTTCCG 95044 Query 26690 TACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCG 26749 || | || || || ||||| || |||| || ||||| ||||||| || || || || Sbjct 95043 TAAARTAGAGATCCAGAAACAGGTTCACTAATACCATCAATATCTATTGGAGGAGCAGCA 94984 Query 26750 ATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCC 26808 ||||||| || ||||| ||| | ||| || | | |||| || ||||| | || || Sbjct 94983 ATGAAGGYAATAATAAATACA-GAAGTTGCRGTCAATAAGGTAGGGATCATYAAAACACC 94925 Query 26809 GAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCACTCACAAAA 26859 |||||||| | || |||||||| | ||| || || | ||| | ||| || Sbjct 94924 AAACCATCCAATGTAAAGACGGTTTTTAGTGCTGGTTATCCAGTTACAGAA 94874 Score = 329 bits (364), Expect = 1e-85 Identities = 535/774 (69%), Gaps = 2/774 (0%) Strand=Plus/Plus Query 26087 AAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAG 26146 |||||||| | |||||| || || ||||| ||||| || || || |||| ||||| Sbjct 26673 AAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAA 26732 Query 26147 TACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAA 26206 || || | ||||| || |||||||| || ||||| |||||||| || | || | | | Sbjct 26733 TAACCATAAGCAGCTACGATATTATAAGTTTCTTCCTCTTGCCCGAATCTGTAAACTTCA 26792 Query 26207 TTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGC 26266 || || | | ||| | ||||| || | ||||| ||||| || ||| Sbjct 26793 TTAGCAGATTCATTTTCTATGGTTTCCTTGATCAAACTAGAAGTTACCAAGGAACCATGC 26852 Query 26267 ATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGC 26326 |||||| ||| || | | ||||| || ||||| ||||| ||| || ||||||||| Sbjct 26853 ATAGCACTGAATAGGGAGCYGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGC 26912 Query 26327 ATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCA 26386 || || || || || || || ||||| || | ||| ||||| |||||||||||||| || Sbjct 26913 ATAAGGATGTTGTGCTCAGCCTGGAACACAATCATGAAGTTGAAAGTACCAGAGATTCCT 26972 Query 26387 AGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGA 26446 |||||||| || ||| ||| || |||| || | || || | ||||| || || | Sbjct 26973 AGAGGCATACCGTCAGAAAAGCTTCCTTTACCAATTGGGTAGATCAAGAAAACAGCAGTA 27032 Query 26447 GCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAA 26506 || || | | || |||| |||||||||| ||||| || | ||| || || | | || Sbjct 27033 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACACATACCCAGACGGAAA 27092 Query 26507 GATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATG 26566 |||||||||| || || || |||||| || | ||||| ||| | | ||| Sbjct 27093 CTAAGTTCCCACTCTCGACCCATGTAACATGCTACACCAAGTAAGAWGTGTAGAACAATT 27152 Query 26567 AGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGG 26626 || | ||| || || |||||||||| ||| || || | |||||||||| |||||| Sbjct 27153 AGCTCATAAGGACCACCATTGTATAACCATTCATCAACGRAAGCAGCTTCCCATATCGGG 27212 Query 26627 TAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTT 26686 ||||| || | || || || ||| | |||| | || || || || ||||||||| Sbjct 27213 TAAAAGTGCAACCCRATAGCTGCAGAAGTAGGGATAATGGCACCAGAAATAATATTGTTT 27272 Query 26687 CCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCT 26746 ||||| | || || || |||| || |||| || ||||| ||| |||| || || || Sbjct 27273 CCGTAAARTAGAGATCCAKAAACAGGTTCACKAATACCATCAATAYCTACTGGAGGAGCA 27332 Query 26747 GCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCAC 26805 || |||||||||| ||||| ||| | ||| || | | |||| || ||||| | || Sbjct 27333 GCAATGAAGGCAATAATAAATACA-GAAGTTGCRGTCAATAAGGTAGGGATCATCAAAAC 27391 Query 26806 CCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCACTCACAAAA 26859 || |||||||| | || ||| ||| ||||| || || | ||| | ||| || Sbjct 27392 ACCAAACCATCCAATRTAAAGAYRGTTTTCAGTGCTGGTTATCCAGTTACAGAA 27445 >seq850 Length=2209 Score = 167 bits (184), Expect = 7e-37 Identities = 224/310 (72%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 26551 GAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCC 26610 |||||| | | ||| || | ||| || || |||||||||| ||| || || | | | Sbjct 336 GAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACGGAAGC 277 Query 26611 AGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCC 26670 ||||||||| ||||||||||| || | || || || ||| | |||| | || || Sbjct 276 AGCTTCCCATATCGGGTAAAAGTGCAACCCAATAGCTGCAGAAGTAGGGATAATGGCACC 217 Query 26671 TGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTAT 26730 || || |||||||||||||| | || || || ||||| || ||||| || ||||| || Sbjct 216 AGAWATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAAT 157 Query 26731 ATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTAAGC 26789 |||||| || || || || |||||||||| ||||| ||| | ||| || | | |||| Sbjct 156 ATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA-GAAGTTGCGGTCAATAAGG 98 Query 26790 AGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCC 26849 || ||||| | || || |||||||| | ||| |||||||| ||||| || || | || Sbjct 97 TAGGGATCATCAAAACACCAAACCATCCAATATAAAGACGGTTTTCAGTGCTGGTTATCC 38 Query 26850 ACTCACAAAA 26859 | | ||| || Sbjct 37 AGTTACAGAA 28 >seq76 Length=1023076 Score = 152 bits (168), Expect = 2e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||||||| || || ||||| ||||||||||| || ||||||||||| | || || ||| Sbjct 1004547 GCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 1004488 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 1004487 GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 1004428 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||| ||| || ||||| |||| ||||| | || || | | Sbjct 1004427 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCGGTGAAC 1004368 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACG 26103 || || || || || ||||||| ||| || |||||||| | |||||| Sbjct 1004367 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACG 1004321 >seq8 Length=4047118 Score = 147 bits (162), Expect = 6e-31 Identities = 222/313 (71%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 26505 AAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAA 26564 || |||||||||||| || || || |||||| || | ||||||||| | | || Sbjct 2332251 AAAATAGTTCCCACTCTCGACCCATGTAACATGCTACACCAAGTAAGAAGTGTAGAACAA 2332192 Query 26565 TGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCG 26624 | || | ||| || || |||||||||| ||| || || | | |||||||||| |||| Sbjct 2332191 TTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACGGAAGCAGCTTCCCATATCG 2332132 Query 26625 GGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGT 26684 ||||||| || | || || || ||| | |||| | || || || || ||||||| Sbjct 2332131 GGTAAAAGTGCAACCCAATAGCTGCAGAAGTAGGGATAATGGCACCAGAAATAATATTGT 2332072 Query 26685 TTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTG 26744 ||||||| | || || || ||||| || ||||| || | ||| |||||||| || || | Sbjct 2332071 TTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACTATCAATATCTACTGGAGGAG 2332012 Query 26745 CTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGC 26803 | || |||||| ||| ||||| ||| | ||| || | | |||| || ||||| | Sbjct 2332011 CAGCAATGAAGACAATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAA 2331953 Query 26804 ACCCCGAACCATC 26816 || || ||||||| Sbjct 2331952 ACACCAAACCATC 2331940 >seq96 Length=850568 Score = 105 bits (116), Expect = 2e-18 Identities = 171/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 26389 AGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGC 26448 |||||| || ||| ||| || ||||| || | || || | ||||| || || ||| Sbjct 64587 AGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGC 64646 Query 26449 TGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGA 26508 || | | || |||| |||||||||| ||||| || | ||| || || | | || Sbjct 64647 AGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACT 64706 Query 26509 TAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAG 26568 |||||||||| || || || |||||| || | ||||||||| | | ||| || Sbjct 64707 AAGTTCCCACTCTCGACCCATGTAACATGCTACACCAAGTAAGAAGTGTAGAACAATTAG 64766 Query 26569 TTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTA 26628 | ||| || || |||||||||| ||| || || | | |||||||||| |||||||| Sbjct 64767 CTCATAAGGACCACCATTGTATAACCATTCATCAACGGAAGCAGCTTCCCATATCGGGTA 64826 Query 26629 AAAATG 26634 ||| || Sbjct 64827 AAAGTG 64832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147710154707840