Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq124 118 2e-21 seq14 113 8e-20 >seq124 Length=632428 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 ||||||| |||| | || | |||||| |||||||||||||| || || || || Sbjct 447026 AGTACCAAATGCGAAGTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGTCT 447085 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | ||| ||||| || ||||| | ||||| || || || || || || ||||||||| Sbjct 447086 TCCAGTTGCTTTCCAGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCT 447145 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || ||||| | || | || || ||||| ||| |||||| || ||||| || ||| Sbjct 447146 TGAATTTTAGCCTTCACGTTGTCGATGGTATCCGAACTCTCAACCTCCAGAGTGATTGTT 447205 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || |||| || || ||||| || |||||| Sbjct 447206 TTTCCCGTTAAGGTCTTCACAAAAATCTGCATT 447238 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| ||||||||| | || || |||||| ||||| | | || | | Sbjct 447479 CGAAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCAGCCAGAGTGCGGCCA 447538 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||| || || ||||| | ||||| || || || || || || |||||| Sbjct 447539 TCTTCGAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATACCCTCTTTA 447598 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| || | ||| || ||||| || || || || | || || Sbjct 447599 TCTTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGCTTTCCACCTCCAAGGTGATG 447658 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || ||||| || || |||||||| Sbjct 447659 GTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693 >seq14 Length=2855554 Score = 113 bits (124), Expect = 8e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| |||||| |||| ||||| ||||| ||||| | | || | Sbjct 998874 CGAAGCACCAAATGCAAAGTAGATTCTTTCTGGATATTGTAGTCAGCAAGAGTACGGCCG 998815 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || |||||||| | ||||||||||||||||| || || || ||| Sbjct 998814 TCCTCAAGCTGCTTACCAGCAAAAATCAGCCTCTGTTGATCAGGAGGGATACCCTCCTTA 998755 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | || | ||| ||| ||||| ||| || || || || || || Sbjct 998754 TCTTGGATTTTAGCCTTCACATTGTCAATCGTATCAGAACTTTCCACCTCAAGCGTGATG 998695 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || |||||||||||||| Sbjct 998694 GTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 998660 Score = 102 bits (112), Expect = 1e-16 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | | || ||| |||||||| | |||| || || ||||| Sbjct 998667 ATTTGCATCCCACCGCGAAGTCTAAGCACCAGATGAAGAGTAGATTCCTTCTGGATATTG 998608 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||| | |||| | ||| || | ||| || || || || || | || || || Sbjct 998607 TAATCGGCAAGGGTTCGACCATCCTCGAGTTGCTTACCAGCGAAGATAAGCCTTTGCTGG 998548 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| ||||| ||||||||||| || || | |||| ||| ||| ||||| ||| Sbjct 998547 TCGGGAGGAATTCCCTCTTTATCTTGGATCTTTGCCTTTACATTGTCAATGGTATCCGAA 998488 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || ||||| || || || ||||| || || |||||||| Sbjct 998487 CTTTCCACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 998432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899642569544640