Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq14 118 2e-21 seq124 102 2e-16 seq60 91.5 3e-13 seq21 86.0 1e-11 >seq14 Length=2855554 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||| || | || ||||| ||||||| ||||| |||||| || ||| Sbjct 998889 ATACCCCCACGAAGCCGAAGCACCAAATGCAAAGTAGATTCTTTCTGGATATTGTAGTCA 998830 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || || | || ||||||||||| || | |||||||||||||| Sbjct 998829 GCAAGAGTACGGCCGTCCTCAAGCTGCTTACCAGCAAAAATCAGCCTCTGTTGATCAGGA 998770 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| |||||| || ||||| || | ||| || ||| Sbjct 998769 GGGATACCCTCCTTATCTTGGATTTTAGCCTTCACATTGTCAATCGTATCAGAACTTTCC 998710 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || |||||||| ||||| | || || | |||||| ||||| Sbjct 998709 ACCTCAAGCGTGATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 998660 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| |||||||| | | || | | || || | ||| |||||||||||||| || || Sbjct 999070 GATGTTATAATCTGCCAGAGTCCTACCGTCTTCGAGTTGCTTACCAGCAAAGATCAACCT 999011 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||| |||||||| || || || |||||||| || || ||| |||||| || | Sbjct 999010 CTGTTGGTCAGGTGGAATGCCCTCCTTATCTTGGATCTTGGCTTTCACATTATCGATTGT 998951 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || || || || | || || ||||| ||||| || ||||||| ||| ||||| Sbjct 998950 ATCAGAGCTCTCGACCTCCAAGGTGATTGTTTTGCCAGTCAAGGTTTTAACAAAAATCTG 998891 Query 192534 CAT 192536 ||| Sbjct 998890 CAT 998888 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| | | || | ||| | ||||| || || |||||| ||||| Sbjct 998661 ATCCCACCGCGAAGTCTAAGCACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCG 998602 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | ||| |||||||| ||||| | || || || || || Sbjct 998601 GCAAGGGTTCGACCATCCTCGAGTTGCTTACCAGCGAAGATAAGCCTTTGCTGGTCGGGA 998542 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||||||||| || || |||||||| || | ||| || ||| Sbjct 998541 GGAATTCCCTCTTTATCTTGGATCTTTGCCTTTACATTGTCAATGGTATCCGAACTTTCC 998482 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || ||||| ||||| | ||||| | || || ||||| Sbjct 998481 ACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 998432 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| || | ||| |||||||||||||| | |||||||| |||||||| || || || | Sbjct 999272 CATCTTCTAGTTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCAGGTGGGATGCCCTCCT 999213 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | ||||| || || ||| ||||| || | ||| || || ||||| | ||| | Sbjct 999212 TGTCTTGGATCTTGGCTTTCACATTGTCAATGGTATCAGAGCTCTCCACTTCCAAAGTGA 999153 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || || || || || || | ||| |||||||| Sbjct 999152 TCGTCTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 999116 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||| | || ||||| |||| |||| |||||| ||||||||||| |||||| Sbjct 999753 ATGTTGTAATCCGCCAAAGTTCGCCCATCCTCCAGTTGTTTCCCAGCAAAGATCAATCTC 999694 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 |||||||| || || || || || || ||||| || || || || || || | Sbjct 999693 TGTTGATCTGGAGGAATCCCCTCCTTGTCTTGAATCTTTGCCTTCACGTTGTCGATTGTG 999634 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || ||| || || | || || || || || || | ||| || | ||| |||||| Sbjct 999633 TCCGAGCTTTCGACCTCCAACGTGATCGTCTTCCCTGTCAGTGTCTTCACAAAGATCTGC 999574 Query 192535 AT 192536 || Sbjct 999573 AT 999572 >seq124 Length=632428 Score = 102 bits (112), Expect = 2e-16 Identities = 164/235 (70%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 192306 AATACCACCTCTAAGACGTAA---TACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 || |||||| | |||||| | ||| ||||| |||| | |||||| |||||||| Sbjct 447004 AAGACCACCACGAAGACGCAGCAGTACCAAATGCGAAGTCGACTCTTTTTGAATATTATA 447063 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 || | || || | | || |||| ||| || ||||| || || | ||||| || || Sbjct 447064 GTCGGCCAAAGTCCTGCCGTCTTCCAGTTGCTTTCCAGCGAAAATCAGCCTCTGCTGGTC 447123 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 ||||| || || ||||||||||| |||||| || || || || | ||| || Sbjct 447124 TGGTGGGATGCCCTCTTTATCTTGAATTTTAGCCTTCACGTTGTCGATGGTATCCGAACT 447183 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || ||||| || ||||| || ||||| || || | ||| ||||||||| Sbjct 447184 CTCAACCTCCAGAGTGATTGTTTTTCCCGTTAAGGTCTTCACAAAAATCTGCATT 447238 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | | ||| | || || || | || | |||||| || || ||||| Sbjct 447692 ATCCCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCG 447751 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| | || || | || || ||||| ||||||| ||||| || || ||| Sbjct 447752 GCCAGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGT 447811 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || || || ||||| |||||||| |||| ||| || ||| Sbjct 447812 GGAATTCCTTCCTTGTCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCA 447871 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| ||||| || || | ||||| | |||||||||||| Sbjct 447872 ACCTCAAGGGTAATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921 >seq60 Length=1131370 Score = 91.5 bits (100), Expect = 3e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| |||||||| | | |||||| ||||||||||||| ||||||||||| ||||| || Sbjct 437163 GATGTTATAATCTGCAAGTGTTCGACCATCATCCAATTGCTTACCAGCAAAAATTAACCT 437222 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATC 192443 || || |||||||| || |||||||| || Sbjct 437223 TTGCTGGTCAGGTGGGATACCTTCTTTGTC 437252 >seq21 Length=2013095 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || ||||| | || || || || |||| ||| || ||| ||||| || Sbjct 1809685 ATCCCTCCCCTGAGACGAAGCACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCG 1809626 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | | || |||| || || || || ||||| | ||||| || || ||| Sbjct 1809625 GCCAGAGTCCTACCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGT 1809566 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| ||||| || ||| |||||||| ||| | || || || Sbjct 1809565 GGGATTCCCTCTTTGTCTTGGATCTTAGCCTTTACATTGTCTATGGTGTCCGAACTCTCA 1809506 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||||||||| || || || || || | || |||||||| Sbjct 1809505 ACCTCCAGGGTAATGGTTTTCCCGGTCAACGTCTTGACGAAAATCTGCAT 1809456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984466730440200