Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq124 116 7e-21 seq14 113 8e-20 seq21 91.5 3e-13 seq60 89.7 9e-13 >seq124 Length=632428 Score = 116 bits (128), Expect = 7e-21 Identities = 167/235 (71%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAA---TACTAAATGTAAAGTAGCCTCTTTAGAAATATTATA 171895 || |||||| | ||| || | ||| ||||| |||| | |||||| ||||||||| Sbjct 447004 AAGACCACCACGAAGACGCAGCAGTACCAAATGCGAAGTCGACTCTTTTTGAATATTATA 447063 Query 171896 ATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTC 171955 || | |||| | |||| |||| ||| || ||||| ||||| | ||||| ||||| Sbjct 447064 GTCGGCCAAAGTCCTGCCGTCTTCCAGTTGCTTTCCAGCGAAAATCAGCCTCTGCTGGTC 447123 Query 171956 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA 172015 ||||| || || ||||||||||| |||||| || || || || ||||| || Sbjct 447124 TGGTGGGATGCCCTCTTTATCTTGAATTTTAGCCTTCACGTTGTCGATGGTATCCGAACT 447183 Query 172016 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || ||||| || ||||| || ||||| || || | || ||||||||| Sbjct 447184 CTCAACCTCCAGAGTGATTGTTTTTCCCGTTAAGGTCTTCACAAAAATCTGCATT 447238 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | || || ||||| || |||| ||||| ||||| ||||| |||||||| | Sbjct 447765 CGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGAATTCCTTCCT 447824 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | || || ||||| |||||||| |||||||| || ||| || || || |||| Sbjct 447825 TGTCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACCTCAAGGGTAA 447884 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||||| || || | ||||| | ||||||||||| Sbjct 447885 TTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || | ||| || | || ||||| || || | || || |||||| || || Sbjct 447464 ATTCCCCCACGAAGACGAAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCA 447523 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || || | ||||||||| || ||||| | ||||| ||||| ||| Sbjct 447524 GCCAGAGTGCGGCCATCTTCGAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGT 447583 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||||||||| || || || ||||| || ||||| || ||| Sbjct 447584 GGAATACCCTCTTTATCTTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGCTTTCC 447643 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || |||||||| ||||| | ||||| | ||| || ||||| Sbjct 447644 ACCTCCAAGGTGATGGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693 >seq14 Length=2855554 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || | || ||||| ||||||| ||||| ||||| || || Sbjct 998889 ATACCCCCACGAAGCCGAAGCACCAAATGCAAAGTAGATTCTTTCTGGATATTGTAGTCA 998830 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || |||| || | || |||||||||||||| | |||||||| ||||| Sbjct 998829 GCAAGAGTACGGCCGTCCTCAAGCTGCTTACCAGCAAAAATCAGCCTCTGTTGATCAGGA 998770 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| |||||| || ||||| || ||||| || ||| Sbjct 998769 GGGATACCCTCCTTATCTTGGATTTTAGCCTTCACATTGTCAATCGTATCAGAACTTTCC 998710 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || |||||||| ||||| | || || | ||||| ||||| Sbjct 998709 ACCTCAAGCGTGATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 998660 Score = 113 bits (124), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||||| | || | |||| || | ||| ||||||||||| || || ||| Sbjct 999069 ATGTTATAATCTGCCAGAGTCCTACCGTCTTCGAGTTGCTTACCAGCAAAGATCAACCTC 999010 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 |||||||||||||| || || || |||||||| || || ||| |||||| || ||| Sbjct 999009 TGTTGGTCAGGTGGAATGCCCTCCTTATCTTGGATCTTGGCTTTCACATTATCGATTGTA 998950 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || || | || || ||||| ||||| || ||||||| || |||||| Sbjct 998949 TCAGAGCTCTCGACCTCCAAGGTGATTGTTTTGCCAGTCAAGGTTTTAACAAAAATCTGC 998890 Query 172068 AT 172069 || Sbjct 998889 AT 998888 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||||| | || | ||| | ||||| || || ||||| ||||| Sbjct 998661 ATCCCACCGCGAAGTCTAAGCACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCG 998602 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| | || || | ||| |||||||| || || | || || ||||| || Sbjct 998601 GCAAGGGTTCGACCATCCTCGAGTTGCTTACCAGCGAAGATAAGCCTTTGCTGGTCGGGA 998542 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||||||||| || || |||||||| || ||||| || ||| Sbjct 998541 GGAATTCCCTCTTTATCTTGGATCTTTGCCTTTACATTGTCAATGGTATCCGAACTTTCC 998482 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || ||||| ||||| | ||||| | ||| || ||||| Sbjct 998481 ACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 998432 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | | ||| | || ||||| | ||| | || || || || |||||| Sbjct 999573 ATCCCACCGCGCAATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCT 999514 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | ||||| || | || || | ||| || || || || || || ||||||||||| ||| Sbjct 999513 GCTAAAGTTCTGCCATCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGT 999454 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || || |||||| || ||||| || || Sbjct 999453 GGGATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCC 999394 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| || || || ||||| || ||||| | || |||||||| Sbjct 999393 ACTTCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344 >seq21 Length=2013095 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || || || || | || || || || |||| ||| || || ||||| || Sbjct 1809685 ATCCCTCCCCTGAGACGAAGCACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCG 1809626 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | |||| |||| || || || || || || | ||||| ||||| ||| Sbjct 1809625 GCCAGAGTCCTACCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGT 1809566 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| ||||| || ||| |||||||| ||| || || || || Sbjct 1809565 GGGATTCCCTCTTTGTCTTGGATCTTAGCCTTTACATTGTCTATGGTGTCCGAACTCTCA 1809506 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||||||||| || || || || || | ||| |||||||| Sbjct 1809505 ACCTCCAGGGTAATGGTTTTCCCGGTCAACGTCTTGACGAAAATCTGCAT 1809456 >seq60 Length=1131370 Score = 89.7 bits (98), Expect = 9e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| |||| || || || | || || | || | || | ||| || || |||| Sbjct 437111 TCATAGTACCTCCCCTGAGCCTCAAGACCAGGTGAAGGGTTGACTCCTTTTGGATGTTAT 437170 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| | | ||| | ||||||||||| ||||||||||||||||| || || |||| Sbjct 437171 AATCTGCAAGTGTTCGACCATCATCCAATTGCTTACCAGCAAAAATTAACCTTTGCTGGT 437230 Query 171955 CAGGTGGTATTCCTTCTTTATC 171976 ||||||| || |||||||| || Sbjct 437231 CAGGTGGGATACCTTCTTTGTC 437252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905124097461600