Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq60 138 3e-27 seq36 113 1e-19 seq49 109 2e-18 seq1 98.7 3e-15 seq72 87.8 5e-12 seq52 87.8 5e-12 seq5 86.0 2e-11 >seq60 Length=1131370 Score = 138 bits (152), Expect = 3e-27 Identities = 329/488 (67%), Gaps = 26/488 (5%) Strand=Plus/Plus Query 288873 TAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT 288932 ||| || | ||| | ||||| || ||||| || || || | ||||| ||| |||| Sbjct 1083025 TAAGGCAGAGTCGAGAATATCTGCCCTGTTGGTGGCAGCAATTACAATGATAC---CGGT 1083081 Query 288933 TTG---CTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATC 288989 | || || |||||||| ||||||| ||| || ||||| ||||| |||||||| Sbjct 1083082 ATTACCCTCGAAACCATCCATTTCGGTTAAAAGTTGGTTGAGTGTCTGTTCTCTTTCATC 1083141 Query 288990 ATTTGAACCTCTTGAATCACCCGAATC---GCTCCtttttttA--CCAACAGCATCAATT 289044 ||| |||| |||| |||| |||||| ||| | || || ||||||||| Sbjct 1083142 ATTC---CCTC------CACC--AATCCCAGCTCCTCTTTGTCGCCCGACCGCATCAATT 1083190 Query 289045 TCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACA 289104 || |||| || | | || |||| ||| | | | || | |||| || | || Sbjct 1083191 TCATCAACAAACACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAATAGGTCGCGAACT 1083250 Query 289105 CGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAA 289163 || ||||| |||| ||||||| |||| || ||||| |||||| | |||| | || | || Sbjct 1083251 CGAGATGCACCAACACCAACAAACATCTCAACAAACTCAGAACCTGATA-TGGAGAAAAA 1083309 Query 289164 TGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGG 289223 || ||| ||||| || || | ||| | ||||| || |||||||| |||||||| || Sbjct 1083310 TGGAACACCAGCTTCACCAGCAATTGCTTTTGCCAGCAGAGTCTTACCAGTTCCAGGAGG 1083369 Query 289224 TCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCT 289283 || | ||||| || || || | || ||| | | || | ||||||| | Sbjct 1083370 ACCAATAAGAAGAACACCTTTAGGAATCCGAGCTCCAACTGCAGTAAACCTCTCAGGCTT 1083429 Query 289284 CTTTAAAAATTCTACAATTTCC-TCAAGTTCATATTTTGCCTCATCACATCCTGCTACAT 289342 ||| ||||| ||||| | ||| | ||| || | ||| || |||||| || || |||| Sbjct 1083430 CTTCAAAAACTCTACGACCTCCATGAAG-TCCTGTTTCGCTTCATCAACACCAGCCACAT 1083488 Query 289343 CAGCAAAA 289350 || ||||| Sbjct 1083489 CATCAAAA 1083496 >seq36 Length=1471653 Score = 113 bits (124), Expect = 1e-19 Identities = 299/447 (67%), Gaps = 10/447 (2%) Strand=Plus/Minus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 ||||| || ||| |||||| | ||| || || ||||| ||| | || | | | Sbjct 1270189 TTTCTAACAGTCCCATCATATTTTACCATGATATCCTCCATGGCCTTTACCAACCTCCTC 1270130 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 || || || || ||| || || || || || |||||||| ||||| | | ||||||| Sbjct 1270129 TGGATGTACCCTGTTTCTGACGTCTTAACTGCAGTATCAATAAGACCTTCCCTACCACCC 1270070 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 |||||||| || || | ||| | || | |||| || | | ||| | || || || Sbjct 1270069 ATAGCATGAAAAAAGAACTCCTGTGGAGTCAATCCCCGAAGATATGAGTTTTCGACAAAG 1270010 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCAT-- 302776 ||||| ||| ||| || || || || || || |||| || | | || || Sbjct 1270009 CCACGACTCTCAGGCCCATAATCATCTTTAGTGAAATGGGGCAATGTTC-GATCG-ATGA 1269952 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || |||| || |||||||| ||||| || ||||| |||| || | | ||||||| | Sbjct 1269951 AACCAAATGGTATCCGCTTTCCTTCAACATTTTGCTGCCCCACACAAGCAGTCATCTGGG 1269892 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT-AATAACAAACCTGTTATTC 302895 | ||||| | | |||||||||||| || ||| | ||||| | || | ||||| || Sbjct 1269891 AGATATTGATAAAACTGCCCTTGGATCCTGCAGTAACCATGGCTTTCAGA-TTGTTACTC 1269833 Query 302896 T-TGTCTAA-ATTGGTGCGTCCTAACTTACCAGCCTCAAAAGAAGCCTTGTTTAAGATAT 302953 | || | || || |||| ||| ||||||| ||| | ||||||||| |||| | Sbjct 1269832 TCTGACAAACTTTTTTGCGCACTA--CTACCAGCATCATCACGAGCCTTGTTCAAGACCT 1269775 Query 302954 TATTCACTTGTGTCTCAAATTCTTCCA 302980 ||||||| | ||||| ||||| Sbjct 1269774 GGTTCACTTTATTTTCAAAAGATTCCA 1269748 >seq49 Length=1248075 Score = 109 bits (120), Expect = 2e-18 Identities = 316/481 (66%), Gaps = 8/481 (2%) Strand=Plus/Plus Query 288873 TAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT 288932 ||| || | ||| | || || || |||||||| || || | ||||| ||| | | Sbjct 901111 TAAGGCAGAGTCAAGAATGTCTGCCCTGTTTGTGGCAGCAATTACAATAATGCCAGTGTT 901170 Query 288933 TTGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATT 288992 | || ||| |||||||| |||| || || || || || ||||| ||||||||||| Sbjct 901171 TCCCTCAAACCCATCCATTTCAGTTAGAAGCTGGTTGAGGGTCTGTTCTCTTTCATCATT 901230 Query 288993 TGAACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAAT 289052 ||| | ||| | | | ||| || | ||||||||||||||||| |||| Sbjct 901231 CCCACCACC--AATTCC---AGTACCTCTTTGACGT-CCAACAGCATCAATTTCATCAAC 901284 Query 289053 GAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGC 289112 || | | || |||| ||||| | || | || | || | ||||| || || Sbjct 901285 AAACACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAGAGATCACGAACACGAGAAGC 901344 Query 289113 TCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACAT 289171 |||| ||| ||| |||| || ||||| || ||| | || | | || | |||| ||| Sbjct 901345 ACCAATACCGACAAACATCTCAACAAACTCGGAACCTGA-AATGGAGAAAAATGGGACAC 901403 Query 289172 TTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTA 289231 |||||| ||||| | ||| | || || || ||||| || ||||| || || || | | Sbjct 901404 CTGCTTCACCTGCAATGGCCTTGGCTAGCAGAGTCTTCCCAGTTCCTGGAGGACCAACGA 901463 Query 289232 ATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAA 289291 ||||| || || || | |||||| ||| | | ||||||| |||||| || Sbjct 901464 GAAGAACACCTTTGGGAATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTTAGAA 901523 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAG 289351 | || || | ||| | || | ||| || ||||| ||| || |||||| |||||| Sbjct 901524 ACTCCACCACCTCCATGAAATCCTGTTTAGCTTCATCTACTCCAGCAACATCATCAAAAG 901583 Query 289352 T 289352 | Sbjct 901584 T 901584 >seq1 Length=7185522 Score = 98.7 bits (108), Expect = 3e-15 Identities = 220/325 (68%), Gaps = 4/325 (1%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG-C 289088 || ||||||||||| || |||||||| | | || || | ||| | || | || | Sbjct 6703736 CCCACAGCATCAATCTCATCAATGAAGACAATGCAAGGGGC-TTTGGACTTGGCCTTCTC 6703678 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || || || || || | || || || | ||| ||| ||| ||||||||| || || || Sbjct 6703677 GAACAAGTCCCTCACTCTCGAAGCACCCACACCCACAAACAGTTCTACAAACTCTGAGGC 6703618 Query 289149 GG-ATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 | | || ||| ||||| ||| || || || || || |||| |||||||| |||| Sbjct 6703617 AGCACACGAGAA-GAATGGCACACCAGCCTCTCCGGCCACGGCCCGGGCCAGAAGAGTCT 6703559 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 | || || ||||| ||||| | | || || ||||| | ||| || ||| || Sbjct 6703558 TTCCGGTACCAGGAGGTCCAACGAGGAGGCACCCTTTTGGGATTTTGGCTCCAAGAGCAG 6703499 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 | || || |||||| | || || || || || | ||||| |||||| || || | | Sbjct 6703498 TGTACTTATCAGGGTTTTTCAAGAAATCGACCACTTCCTGCAGTTCAAGCTTCGCTTGGT 6703439 Query 289328 CACATCCTGCTACATCAGCAAAAGT 289352 | ||| || |||||||||||||| Sbjct 6703438 CGGCTCCGGCAACATCAGCAAAAGT 6703414 >seq72 Length=1061713 Score = 87.8 bits (96), Expect = 5e-12 Identities = 107/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 |||||| | ||||| ||||| || || || | |||||||| | ||||||||||||| Sbjct 351368 TGCAAAGAGATCTCTCACACGAGAGGCACCCATGCCAACATATAGTTCTACAAATTCACT 351309 Query 289146 AGCGGAT--ACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 ||| || |||| || || | ||| | ||||| || || |||||| | || ||||| Sbjct 351308 AGCAGAACAACTT--ATAAAGGGTACTTCAGCTTCCCCAGCAACTGCCTTGGCTAGAAGA 351251 Query 289204 GTCTTACCTGTTCCAGGTGGTCCC 289227 ||||||||||| || ||| | ||| Sbjct 351250 GTCTTACCTGTCCCCGGTAGGCCC 351227 >seq52 Length=1204374 Score = 87.8 bits (96), Expect = 5e-12 Identities = 155/223 (70%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 |||||| ||||||||| || || || || ||||| |||||||| | |||||| || | Sbjct 502977 ACTACCTTTCCTCTTGCCTCCTCCTTGGTCAACATATCGAGCAGTATCATTGAAAACCCG 503036 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT-GCGAACCAGATG 156162 |||||||| | ||| ||||| || || || || ||||| || || | | ||| | | Sbjct 503037 CAGCATAGGCACAATCCCATTAGAGGTTCCGTTTGTTCCACGGATGTAACTGCCCATA-G 503095 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 |||| ||| || ||| | ||||| ||||| | |||| || ||| || | Sbjct 503096 CACGAATATTGTGGATAGAAACACCAATGCCACCAGCTGATTTGCTGATAACAGCACACT 503155 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 |||||| |||| | |||||||| ||| ||| |||| ||| Sbjct 503156 CCTTTAAGGTATCATATATACCTTCTATACTATCGTCTTTCAT 503198 >seq5 Length=5307744 Score = 86.0 bits (94), Expect = 2e-11 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAAT 156342 ||| || ||| || | ||| ||||||| |||||| || || || | ||||||| |||| Sbjct 4279696 AACATACTTGGGGCCTTGGGGTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACC 4279755 Query 156343 ACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATAC 156402 || | ||||||| | |||||| | || |||| || | | |||||||| Sbjct 4279756 ACCGTTGAGACATAGTGTGGTATGTTTTGATAGCAGATTCAATATCATCCTTGTGAATAC 4279815 Query 156403 AGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCA 156462 | || |||||||| ||| || ||||| | ||| |||| | || | || || Sbjct 4279816 CAACAGCAACCCTCATTAGCATGTGTTGAGGTCTCTCCACAACCTTACCCTGAACCTTCA 4279875 Query 156463 GAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGT 156519 |||||||| | |||||||||||| || || ||||| ||| | ||| || |||| Sbjct 4279876 AAAGGTATGACCTTTCCAGAGTTTTGAAACCAAAATAGTCATAATCAAAGTCTCGGT 4279932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471797761738524