Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6 167 3e-35 >seq6 Length=5093711 Score = 167 bits (184), Expect = 3e-35 Identities = 187/250 (75%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| |||||||| || ||||| |||||||| || || || || |||| || || || Sbjct 4851933 GAGTGAATGTTCTCAATTGCGATTTGGAAGCCATAGAACGCTCTAGCCTCCGCAACCTGA 4851874 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||||||||||||||||||||| || ||||| ||||| || ||| ||||||||| Sbjct 4851873 ACCTCCTTCATGAACCGGCCGGCGAGATTCTCCAGAACGATACCATCGGAGGCGGCGAAG 4851814 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || ||||| ||||| ||| || || |||||| | |||| |||| ||| | Sbjct 4851813 AAGGCCAGAACGTGGGAGATGAAATGCTTTTCGTCGGCCGTGAGGCCTTCCCAATGGCGG 4851754 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||| |||||| |||||||| |||||||||| ||||||| ||| || |||||| Sbjct 4851753 AGGTCCTGTGAGAGGTCGACCTCCTCAGCGGTCCAGAACGAGGCCATGGCTTTCTTGTAC 4851694 Query 869873 ATCTCCCATA 869882 || ||||||| Sbjct 4851693 ATTTCCCATA 4851684 Score = 129 bits (142), Expect = 7e-24 Identities = 189/268 (71%), Gaps = 6/268 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||||| |||||| || | | || ||||| ||||| || ||| Sbjct 4852212 CCTTCGTCTCGGGAGATCAATTCGTTTGAGAATGTCAATCCTGGCATAAGGCCTCGTTTC 4852153 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || |||||||||||||| |||||||| || || || || || || ||| Sbjct 4852152 TTCAGCCAGAATATGGCGCAGAAACTTCCCGAGAAGAAAATACCTTCCACACATGCGAAG 4852093 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 || || || ||||| ||||| | ||| ||| || |||||| || | |||||| Sbjct 4852092 CCAATCAGACGCTCTGCAAACGACTCGGAGCC------GTCGATCCATTTTAGCGCCCAC 4852039 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 ||||| || ||| || | || || || ||||||||| | || | || ||| ||| Sbjct 4852038 TCGGCTTTCTTCGCGACGCAAGGTACAGTCTCGATGGCGTGGAACAACCTGTTCTTCTCG 4851979 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCA 869447 | | |||||||| ||||| |||| || Sbjct 4851978 ACTGAGTCCTTGATGTAGGTTTCGAGCA 4851951 Score = 105 bits (116), Expect = 8e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 ||||| ||||| | | |||||| |||||||| || |||| ||||| ||||| |||||| Sbjct 4852518 TACTCTCCCACCCTCTTCTCGAAGAAGTTGGTTTTCCCCTGCAGCGATATCAATTCCATC 4852459 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 || ||||||||| | ||||| ||| | || || | | |||| ||| Sbjct 4852458 CAATCGAACGGGTTCTGTACATTGTAAATCTTGCTGTGCCCTAGGGCTACCAGCAACCGG 4852399 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 || || || ||||||||||||| || ||| || || ||||||| || | | ||| | Sbjct 4852398 TCAGCAACGAACTCGATGTACTCGCTCATCAGATCGCCGTTCATCCCCACCAACGCGCAC 4852339 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCT 868922 ||||| | |||| ||| || || ||||||| || || |||| Sbjct 4852338 GGCAGTGCATCGCACACGAATTCCCTCTCGATATCCACCGCCT 4852296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107052867953484