Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq14 145 7e-30
seq21 113 4e-20
seq4 107 2e-18
seq124 96.9 3e-15
seq15 93.3 4e-14
>seq14
Length=2855554
Score = 145 bits (160), Expect = 7e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| | || || || || || || || || ||| | || || ||| | |
Sbjct 999571 GATGCAGATCTTTGTGAAGACACTGACAGGGAAGACGATCACGTTGGAGGTCGAAAGCTC 999630
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | || | || || |||||| |||||||| || || || ||||| |||||
Sbjct 999631 GGACACAATCGACAACGTGAAGGCAAAGATTCAAGACAAGGAGGGGATTCCTCCAGATCA 999690
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| | ||||||||||| |||||||| ||||||||| | ||| || | ||||| ||
Sbjct 999691 ACAGAGATTGATCTTTGCTGGGAAACAACTGGAGGATGGGCGAACTTTGGCGGATTACAA 999750
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932
|||||| || || ||||| || ||| | || | || ||||||| ||||
Sbjct 999751 CATTCAGAAAGAGTCGACCCTCCACCTCGTCCTCCGCCTGCGCGGTGGCG 999800
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| ||||||| | || || ||||| || || | || || || | |
Sbjct 998888 ATGCAGATTTTTGTTAAAACCTTGACTGGCAAAACAATCACCTTGGAGGTCGAGAGCTCT 998947
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | || | || ||| ||||||||||| || || || || || || || |||
Sbjct 998948 GATACAATCGATAATGTGAAAGCCAAGATCCAAGATAAGGAGGGCATTCCACCTGACCAA 999007
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | ||||||||||| || || || || || || || | || |||||||||||
Sbjct 999008 CAGAGGTTGATCTTTGCTGGTAAGCAACTCGAAGACGGTAGGACTCTGGCAGATTATAAC 999067
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || |||||||||||||| ||| ||||| | |||||||| || ||
Sbjct 999068 ATCCAGAAGGAATCGACACTGCACCTGGTGCTCCGATTGCGTGGTGG 999114
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| ||| | ||||| | || || || || || || | ||||| || | |
Sbjct 999343 GATGCAGATTTTTGTGAAAACCTTGACTGGCAAGACAATCACTTTGGAAGTGGAGAGCTC 999402
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||| || | || | || || |||||| |||||||| || || || || || || ||
Sbjct 999403 CGATACCATTGATAATGTGAAGGCAAAGATTCAAGACAAGGAGGGCATCCCACCAGACCA 999462
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| | |||||||| || || || || || || ||| |||| | ||||||| ||
Sbjct 999463 ACAGAGGTTGATCTTCGCAGGCAAGCAACTCGAAGATGGCAGAACTTTAGCAGATTACAA 999522
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||| ||||||||||| || || || |||||| | ||||||||||| ||
Sbjct 999523 CATCCAAAAGGAATCAACTCTGCATTTGGTGCTTCGATTGCGCGGTGG 999570
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| ||| | || || | || || || || || || | ||||| || | |
Sbjct 999115 GATGCAGATTTTTGTGAAGACCTTGACAGGCAAGACGATCACTTTGGAAGTGGAGAGCTC 999174
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | || | || ||| |||||||||||||| || || || || || || ||
Sbjct 999175 TGATACCATTGACAATGTGAAAGCCAAGATCCAAGACAAGGAGGGCATCCCACCTGACCA 999234
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| | |||||||||| || || || || || ||| || | || ||||||| ||
Sbjct 999235 ACAGAGGCTGATCTTTGCTGGTAAGCAACTAGAAGATGGTAGGACTCTGGCAGATTACAA 999294
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||| || |||||||||||||| ||||||||| | || ||||| || ||
Sbjct 999295 CATACAGAAGGAATCGACACTGCACTTGGTGCTTCGGTTGCGAGGCGG 999342
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||| ||||| | ||||| || || || ||||| || || ||||| || ||| |
Sbjct 998431 GATGCAAATCTTCGTGAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGTTC 998490
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | || | ||||| |||||||||||| ||||| ||||| |||||||| ||
Sbjct 998491 GGATACCATTGACAATGTAAAGGCAAAGATCCAAGATAAAGAGGGAATTCCTCCCGACCA 998550
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| | | ||||| || || || || || |||||| ||| | | | ||||| ||
Sbjct 998551 GCAAAGGCTTATCTTCGCTGGTAAGCAACTCGAGGATGGTCGAACCCTTGCCGATTACAA 998610
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || |||||||| || || || ||||| | || | ||||| ||
Sbjct 998611 TATCCAGAAGGAATCTACTCTTCATCTGGTGCTTAGACTTCGCGGTGG 998658
>seq21
Length=2013095
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | || ||| | ||||| ||||| ||||| || || || || |
Sbjct 1809456 ATGCAGATTTTCGTCAAGACGTTGACCGGGAAAACCATTACCCTGGAGGTTGAGAGTTCG 1809515
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| |||| | ||||| ||||||||||||||||| ||||| || || || ||
Sbjct 1809516 GACACCATAGACAATGTAAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCAGACCAG 1809575
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | ||||||| ||||| || ||||||||||| || | || | || ||||||
Sbjct 1809576 CAGAGGCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGTAGGACTCTGGCCGACTATAAC 1809635
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913
|| || ||||| || || | |||||||||
Sbjct 1809636 ATCCAGAAGGAGTCTACCTTGCACTTGGTG 1809665
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||| |||||| | ||||| | || || || || || || || || || || | |
Sbjct 1809683 GATGCAAATCTTTGTGAAAACCTTGACTGGGAAGACCATCACTCTGGAGGTGGAGAGCTC 1809742
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | || | || ||| || || || ||||| || || || ||||| |||||
Sbjct 1809743 CGACACCATTGACAATGTGAAAGCCAAAATTCAGGACAAGGAGGGTATTCCTCCGGATCA 1809802
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| | |||| || || ||||| |||||||||||| || | | | ||||| ||
Sbjct 1809803 GCAAAGGCTGATTTTCGCAGGGAAGCAGCTGGAGGATGGAAGGACTCTCGCTGATTACAA 1809862
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
||||| ||||| || || || ||| | || ||||
Sbjct 1809863 TATTCAGAAGGAGTCCACTCTTCACCTTGTCCTGCG 1809898
>seq4
Length=5448771
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | |||||| | || || || || || || ||||| || || | ||
Sbjct 199773 ATGCAGATCTTTGTGAAAACGTTGACGGGGAAGACCATAACTCTCGAGGTTGAGAGCTCC 199714
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||| || ||||| || |||||||| || || ||
Sbjct 199713 GATACCATCGACAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATACCGCCGGACCAG 199654
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | |||||||| || || ||||| ||||| ||| | | | ||||| |||
Sbjct 199653 CAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGAACCCTAGCCGATTACAAC 199594
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTT 24915
|| || ||||| || || || ||| | |||||
Sbjct 199593 ATCCAGAAGGAGTCCACGCTCCACCTCGTGTT 199562
Score = 89.7 bits (98), Expect = 5e-13
Identities = 149/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | |||||||| || || || || || || ||||| || || |
Sbjct 205448 ATGCAGATCTTCGTGAAAACGCTGACAGGGAAGACCATAACTCTCGAGGTCGAGAGTTCT 205389
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || ||||| || ||||| || |||||||| || || ||
Sbjct 205388 GATACCATCGATAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATACCGCCGGACCAG 205329
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881
|| ||| | || ||||| || || |||||||||||| |||| | | || | || || |
Sbjct 205328 CAGCGTCTCATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGA-ACTCTTG-CCGACTACA 205271
Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTG 24913
|||| || || || || || |||||| | |||
Sbjct 205270 ACATCCAGAAAGAGTCCACCCTACACCTTGTG 205239
>seq124
Length=632428
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || | |||||||| || || || ||||| || | || || ||| | ||
Sbjct 447465 ATGCAAATTTTCGTCAAAACGCTCACGGGAAAGACTATCACATTGGAGGTTGAAAGCTCC 447406
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | || | || ||| ||||| |||||||| ||||| || ||||| || ||
Sbjct 447405 GACACAATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 447346
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGA--GAAACATGTCAGATTATA 24881
||| | | || || || || || ||||| || ||| || || | || | ||||| |
Sbjct 447345 CAAAGGCTAATTTTCGCAGGCAAGCAGCTTGAAGATG-GACGGACTCTTGCC-GATTACA 447288
Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||||||||||| || || || || | ||| | || | ||||| ||
Sbjct 447287 ACATTCAAAAGGAGTCAACTCTTCATCTAGTGCTCCGTCTTCGCGGTGG 447239
>seq15
Length=2492501
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || ||||| || || || || | || || || | |
Sbjct 255838 ATGCAGATCTTCGTGAAGACCCTTACCGGGAAGACCATCACCTTGGAGGTGGAGAGCTCA 255779
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || ||||| || ||||| || ||||| ||||| || ||
Sbjct 255778 GATACGATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 255719
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | ||||||||||| || || |||||||||||| ||| | || | ||||| |||
Sbjct 255718 CAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAGGATGGGAGGACTCTGGCTGATTACAAC 255659
Query 24884 ATTCAAAAGGAATCGACACTACAC 24907
|| || ||||| || || || |||
Sbjct 255658 ATCCAGAAGGAGTCCACTCTTCAC 255635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449891683846560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |