Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq6 156 7e-32
>seq6
Length=5093711
Score = 156 bits (172), Expect = 7e-32
Identities = 228/323 (71%), Gaps = 6/323 (2%)
Strand=Plus/Minus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|||||||| || |||||||||||| || | || ||||| ||||| || |||
Sbjct 4852212 CCTTCGTCTCGGGAGATCAATTCGTTTGAGAATGTCAATCCTGGCATAAGGCCTCGTTTC 4852153
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
|| ||||| || ||||| |||||||| |||||||| || || || || || || |||
Sbjct 4852152 TTCAGCCAGAATATGGCGCAGAAACTTCCCGAGAAGAAAATACCTTCCACACATGCGAAG 4852093
Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520
|| | || ||||| ||||| | || ||| || |||||| || | |||||||
Sbjct 4852092 CCAATCAGACGCTCTGCAAACGACTCGGAGCCGTC------GATCCATTTTAGCGCCCAC 4852039
Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580
|| || || ||| || | || || || ||||||||| | || | || |||||||
Sbjct 4852038 TCGGCTTTCTTCGCGACGCAAGGTACAGTCTCGATGGCGTGGAACAACCTGTTCTTCTCG 4851979
Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640
|| | |||||||| |||||| |||| | | ||| |||| ||||| ||||| ||
Sbjct 4851978 ACTGAGTCCTTGATGTAGGTTTCGAGCAACAAACTGTACATCTCGGAGTGAATGTTCTCA 4851919
Query 794641 ATGGCGATCTGGAAGCCATAAAA 794663
|| ||||| ||||||||||| ||
Sbjct 4851918 ATTGCGATTTGGAAGCCATAGAA 4851896
Score = 122 bits (134), Expect = 1e-21
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 796147 CTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATG 796206
|| ||||| | || || |||||||||||||| |||||||| || ||||| |||||
Sbjct 4851891 CTAGCCTCCGCAACCTGAACCTCCTTCATGAACCGGCCGGCGAGATTCTCCAGAACGATA 4851832
Query 796207 CCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTG 796266
|| ||| ||||||||| ||||| || ||||| ||| || || |||||| | ||
Sbjct 4851831 CCATCGGAGGCGGCGAAGAAGGCCAGAACGTGGGAGATGAAATGCTTTTCGTCGGCCGTG 4851772
Query 796267 AGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326
|| |||| ||| ||| ||||||||||||||| |||||||| || |||
Sbjct 4851771 AGGCCTTCCCAATGGCGGAGGTCCTGTGAGAGGTCGACCTCCTCAGCGGTCCAGAACGAG 4851712
Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATC 796356
||| ||| || |||||||| |||||||||
Sbjct 4851711 GCCATGGCTTTCTTGTACATTTCCCATATC 4851682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916134493961828
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |