Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq6 156 7e-32 >seq6 Length=5093711 Score = 156 bits (172), Expect = 7e-32 Identities = 228/323 (71%), Gaps = 6/323 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || |||||||||||| || | || ||||| ||||| || ||| Sbjct 4852212 CCTTCGTCTCGGGAGATCAATTCGTTTGAGAATGTCAATCCTGGCATAAGGCCTCGTTTC 4852153 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || ||||| |||||||| |||||||| || || || || || || ||| Sbjct 4852152 TTCAGCCAGAATATGGCGCAGAAACTTCCCGAGAAGAAAATACCTTCCACACATGCGAAG 4852093 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 || | || ||||| ||||| | || ||| || |||||| || | ||||||| Sbjct 4852092 CCAATCAGACGCTCTGCAAACGACTCGGAGCCGTC------GATCCATTTTAGCGCCCAC 4852039 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || || || ||| || | || || || ||||||||| | || | || ||||||| Sbjct 4852038 TCGGCTTTCTTCGCGACGCAAGGTACAGTCTCGATGGCGTGGAACAACCTGTTCTTCTCG 4851979 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 || | |||||||| |||||| |||| | | ||| |||| ||||| ||||| || Sbjct 4851978 ACTGAGTCCTTGATGTAGGTTTCGAGCAACAAACTGTACATCTCGGAGTGAATGTTCTCA 4851919 Query 794641 ATGGCGATCTGGAAGCCATAAAA 794663 || ||||| ||||||||||| || Sbjct 4851918 ATTGCGATTTGGAAGCCATAGAA 4851896 Score = 122 bits (134), Expect = 1e-21 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 796147 CTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATG 796206 || ||||| | || || |||||||||||||| |||||||| || ||||| ||||| Sbjct 4851891 CTAGCCTCCGCAACCTGAACCTCCTTCATGAACCGGCCGGCGAGATTCTCCAGAACGATA 4851832 Query 796207 CCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTG 796266 || ||| ||||||||| ||||| || ||||| ||| || || |||||| | || Sbjct 4851831 CCATCGGAGGCGGCGAAGAAGGCCAGAACGTGGGAGATGAAATGCTTTTCGTCGGCCGTG 4851772 Query 796267 AGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 || |||| ||| ||| ||||||||||||||| |||||||| || ||| Sbjct 4851771 AGGCCTTCCCAATGGCGGAGGTCCTGTGAGAGGTCGACCTCCTCAGCGGTCCAGAACGAG 4851712 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATC 796356 ||| ||| || |||||||| ||||||||| Sbjct 4851711 GCCATGGCTTTCTTGTACATTTCCCATATC 4851682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916134493961828