Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq15 113 3e-20 seq4 100 2e-16 seq14 98.7 6e-16 seq21 91.5 1e-13 seq60 82.4 5e-11 >seq15 Length=2492501 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| ||||||||| ||||| || || | || | | | |||| Sbjct 255627 AGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCCAGAGTCCTCCCATCC 255686 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| |||||||| || ||||||| | ||||||||| | || | ||||||||||| Sbjct 255687 TCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCC 255746 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | |||| || | ||| || || | ||| |||||| Sbjct 255747 TGAATCTTCGCCTTCACGTTGTCAATCGTATCTGAGCTCTCCACCTCCAAGGTGATGGTC 255806 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || ||||||||||| Sbjct 255807 TTCCCGGTAAGGGTCTTCACGAAGATCTGCAT 255838 >seq4 Length=5448771 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | | ||| || || ||||| | |||| ||| ||||| ||||| ||||| | Sbjct 205222 CCTCCACGGAGCCTTAGCACAAGGTGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCA 205281 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || |||| ||||| ||||| || || || || || || |||||||| |||| Sbjct 205282 AGAGTTCGACCATCCTCCAGCTGCTTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGGT 205341 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926 | ||||||||||| | || || || || || ||||||| ||| ||| Sbjct 205342 ATTCCCTCCTTGTCCTGAATCTTGGCCTTCAC--AT--TATCGATGGTATCAGAACTCTC 205397 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || | ||||||||||| || || || || || || ||||||||||| Sbjct 205398 GACCTCGAGAGTTATGGTCTTCCCTGTCAGCGTTTTCACGAAGATCTGCAT 205448 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 || ||||| | ||| ||||||||| ||||| || || | |||| | || | || || Sbjct 199565 ACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCA 199624 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||| || || ||||| || || |||||||| |||| | ||||||||||| | Sbjct 199625 AGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGA 199684 Query 34889 ATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGT 34944 || ||| || || || | ||||| || | ||| || || | |||||||| Sbjct 199685 ATCTTTGCCTTCAC--AT--TGTCGATGGTATCGGAGCTCTCAACCTCGAGAGTTATGGT 199740 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||| | || || |||||||||||||| Sbjct 199741 CTTCCCCGTCAACGTTTTCACAAAGATCTGCAT 199773 >seq14 Length=2855554 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||| ||||||||||| || |||| | | ||| |||| Sbjct 999783 AGGACGAGGTGGAGGGTCGACTCTTTCTGAATGTTGTAATCCGCCAAAGTTCGCCCATCC 999724 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||||||| || || || ||||||| || || || ||| | || | |||||||||||| Sbjct 999723 TCCAGTTGTTTCCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCT 999664 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| || ||| | || | || | ||||| || | || || ||| Sbjct 999663 TGAATCTTTGCCTTCACGTTGTCGATTGTGTCCGAGCTTTCGACCTCCAACGTGATCGTC 999604 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| |||||||||||||| Sbjct 999603 TTCCCTGTCAGTGTCTTCACAAAGATCTGCAT 999572 >seq21 Length=2013095 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||| ||||||| ||| |||||||||||| || || || | || | | |||| Sbjct 1809896 CAGGACAAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCATC 1809837 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || ||||| ||||| | |||||| || | || | ||||||||||| Sbjct 1809836 CTCCAGCTGCTTCCCTGCGAAAATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTC 1809777 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| ||| || | || | || | ||| || || | || ||||| Sbjct 1809776 CTGAATTTTGGCTTTCACATTGTCAATGGTGTCGGAGCTCTCCACCTCCAGAGTGATGGT 1809717 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | ||| || |||||||| ||||| Sbjct 1809716 CTTCCCAGTCAAGGTTTTCACAAAGATTTGCAT 1809684 Score = 89.7 bits (98), Expect = 3e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| ||||| | ||| |||||||||||||||||| || | ||| |||| | || Sbjct 1809440 CAAGACAAGGTGCAGGGTCGACTCCTTCTGAATGTTATAATCAGCAAGGGTGCGACCGTC 1809381 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||||||||||| ||||| ||||| |||| ||| ||||| | || | |||||||| Sbjct 1809380 CTCCAGTTGCTTCCCGGCAAAGATTAGTCTTTGTTGGTCCGGGGGGATGCCCTCCTT 1809324 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||| | | || |||| ||| | ||| ||||||||| ||||||||||| | Sbjct 1809682 CCTCCCCTGAGACGAAGCACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCGGCC 1809623 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | | || ||||| |||||||||||||||||||| | ||||||||| | || Sbjct 1809622 AGAGTCCTACCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGG 1809563 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||| ||||| | || || || || |||| | || ||| || Sbjct 1809562 ATTCCCTCTTTGTCTTGGATCTTAGCCTTTACATTGTCTATGGTGTCCGAACTCTCAACC 1809503 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| ||||| || || || | ||||| || || |||||||| Sbjct 1809502 TCCAGGGTAATGGTTTTCCCGGTCAACGTCTTGACGAAAATCTGCAT 1809456 >seq60 Length=1131370 Score = 82.4 bits (90), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 34743 AATCAT--TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTT 34800 |||||| | |||||||| | ||||| ||||||||||| ||| |||||| || ||||| Sbjct 437109 AATCATAGTACCTCCCCTGAGCCTCAAGACCAGGTGAAGGGTTGACTCCTTTTGGATGTT 437168 Query 34801 ATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTG 34860 ||| || | || | || |||| |||| |||||| || || || || | | |||||| Sbjct 437169 ATAATCTGCAAGTGTTCGACCATCATCCAATTGCTTACCAGCAAAAATTAACCTTTGCTG 437228 Query 34861 GTCTTGCGGCACCCCCTCCTTGTC 34884 ||| | || | || || ||||| Sbjct 437229 GTCAGGTGGGATACCTTCTTTGTC 437252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325688624211188