Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq124 98.7 2e-15
seq14 84.2 3e-11
>seq124
Length=632428
Score = 98.7 bits (108), Expect = 2e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | || || ||||| ||||||||||| ||| | || || || | |
Sbjct 447236 TGCAGATTTTTGTGAAGACCTTAACGGGAAAAACAATCACTCTGGAGGTTGAGAGTTCGG 447177
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| || | || || || |||||| ||| |||||| ||||| ||||| || || |
Sbjct 447176 ATACCATCGACAACGTGAAGGCTAAAATTCAAGATAAAGAGGGCATCCCACCAGACCAGC 447117
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || || ||||| || || || ||| | || || || || || | || |||||||
Sbjct 447116 AGAGGCTGATTTTCGCTGGAAAGCAACTGGAAGACGGCAGGACTTTGGCCGACTATAATA 447057
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240
| |||||||| |||||| ||||| |||
Sbjct 447056 TTCAAAAAGAGTCGACTTCGCATTTGGTA 447028
Score = 87.8 bits (96), Expect = 3e-12
Identities = 155/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| | || || ||||||||||| |||| || ||| | |
Sbjct 447920 TGCAGATATTTGTGAAAACTCTCACCGGCAAAACAATTACCCTTGAGGTTGAAAGTTCTG 447861
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| | |||||||| ||||| || || ||||| |||||||| || || |
Sbjct 447860 ATACTATTGACAATGTAAAGGCCAAAATTCAGGACAAGGAAGGAATTCCACCGGACCAGC 447801
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || || || || || || || || | || || |||| | | ||||| || |
Sbjct 447800 AGAGGCTAATCTTCGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTGGCCGATTACAACA 447741
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257
|||||||||| || || |||| || || | || ||| | || ||
Sbjct 447740 TACAAAAAGAGTCCACGCTCCACTTGGTGCTCCGTTTACGCGGTGG 447695
>seq14
Length=2855554
Score = 84.2 bits (92), Expect = 3e-11
Identities = 136/196 (69%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | ||||| || || || |||||||| || | || || || |
Sbjct 998889 TGCAGATTTTTGTTAAAACCTTGACTGGCAAAACAATCACCTTGGAGGTCGAGAGCTCTG 998948
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| || | ||||| ||| || || ||| ||| || ||||||||||| || ||||
Sbjct 998949 ATACAATCGATAATGTGAAAGCCAAGATCCAAGATAAGGAGGGCATTCCACCTGACCAAC 999008
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || | || ||||| ||||| ||| | || || ||| || | |||||||||| |
Sbjct 999009 AGAGGTTGATCTTTGCTGGTAAGCAACTCGAAGACGGTAGGACTCTGGCAGATTATAACA 999068
Query 146212 TACAAAAAGAATCGAC 146227
| || || ||||||||
Sbjct 999069 TCCAGAAGGAATCGAC 999084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 786156061911840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |