Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq124 149 5e-31 seq14 134 1e-26 seq21 123 2e-23 seq60 98.7 8e-16 >seq124 Length=632428 Score = 149 bits (164), Expect = 5e-31 Identities = 166/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| |||||||| || |||||||| |||||||| ||||| ||||| || | ||| || Sbjct 447704 AAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCCAGGGTTCGG 447763 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 || ||||| || || ||||| | || | || ||||| ||||| ||||| || || Sbjct 447764 CCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGAATTCCTTCC 447823 Query 29689 TTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 ||||| || |||||| | || ||| | || | ||| |||||| ||| || ||||| || Sbjct 447824 TTGTCCTG-AATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACCTCAAGGGT 447882 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| || | ||||| |||||||||||||| Sbjct 447883 AATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||||||| | || ||||| || ||||| || || || || | ||||| Sbjct 447478 ACGAAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCAGCCAGAGTGCGGCC 447537 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||||||||| || || | |||| || ||||| ||||| |||||||||||||| Sbjct 447538 ATCTTCGAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATACCCTCTTT 447597 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | || || ||| | || | || ||||| ||| || || | || || Sbjct 447598 ATCTTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGCTTTCCACCTCCAAGGTGAT 447657 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| | |||||| || || || ||||| Sbjct 447658 GGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693 Score = 111 bits (122), Expect = 1e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| | |||||| || || || ||||||||||| ||||| |||| || || Sbjct 447250 ACGGAGCACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGTCC 447309 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||| || | || | |||||||| || || || ||||| || || Sbjct 447310 ATCTTCAAGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGGAGGGATACCTTCCTT 447369 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | ||||||| | || | ||||| || ||| || || | || | Sbjct 447370 GTCTTG-AATCTTAGCTTTGACATTGTCAATTGTGTCGGAGCTTTCAACCTCCAATGTGA 447428 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| || || || | ||||| || || || |||||| Sbjct 447429 TAGTCTTTCCCGTGAGCGTTTTGACGAAAATTTGCATT 447466 Score = 107 bits (118), Expect = 1e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29573 GCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAAT 29632 |||| |||||||| || || ||||||||||| ||||| || || | || | | Sbjct 447024 GCAGTACCAAATGCGAAGTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGT 447083 Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692 | || ||||| || ||||| | |||| || ||||| || || || || |||||||| | Sbjct 447084 CTTCCAGTTGCTTTCCAGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTAT 447143 Query 29693 CTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 |||| |||||| | || || | || | || || ||| || || || ||||| || Sbjct 447144 CTTG-AATTTTAGCCTTCACGTTGTCGATGGTATCCGAACTCTCAACCTCCAGAGTGATT 447202 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || |||||||| || ||||| ||||||||| Sbjct 447203 GTTTTTCCCGTTAAGGTCTTCACAAAAATCTGCATT 447238 Score = 100 bits (110), Expect = 2e-16 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||| |||||||| | || || ||||||||||||||||| || || | || | Sbjct 354475 ACGCAGTACCAAATGCAAAGTCGACTCTTTTTGAATGTTATAGTCGGCCAAAGTCCTGCC 354416 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 | || ||||| || ||||| | ||||| || ||||| || || || || |||||||| Sbjct 354415 GTGTTCCAGTTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGTGGGATGCCCTCTTT 354356 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA--CTTCAAGAGT 29747 ||||| || || | || ||| | || | || ||||| ||| | || |||| || Sbjct 354355 TTCTTG--ATCTTGGCYTTCACATTGTCGATGGTATCAGAGCTTTCCACCCTCCAAG-GT 354299 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| ||||| | |||||| || || || ||||| Sbjct 354298 GATGGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 354260 >seq14 Length=2855554 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||| || ||||||||||| || || ||||| ||||| ||||| ||||| || Sbjct 999570 CCACCGCGCAATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 999511 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| |||||||| ||||| || | ||||| || || || || || || Sbjct 999510 AAAGTTCTGCCATCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGG 999451 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| |||||||| ||| |||| || ||| | || | || || || || || Sbjct 999450 ATGCCCTCCTTGTCTTG-AATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCCAC 999392 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | ||| || || |||||||| |||||||| ||||| |||||||| Sbjct 999391 TTCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||||| |||||| || ||||| || || || || ||||| |||| ||| ||| ||| Sbjct 998643 AGCACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGACCATCC 998584 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 |||||||| || ||||| | || | |||||||| || || ||||| |||||||| ||| Sbjct 998583 TCGAGTTGCTTACCAGCGAAGATAAGCCTTTGCTGGTCGGGAGGAATTCCCTCTTTATCT 998524 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | ||| || ||| | || | || || ||| ||| || || || || || ||| Sbjct 998523 TGGATCTTTGCCTTTACATTGTCAATGGTATCCGAACTTTCCACCTCGAGGGTGATTGTT 998464 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| | ||||| || || || ||||| Sbjct 998463 TTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 998432 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||| || ||||||| || || || ||||| || || ||||||||||| || Sbjct 999114 CCACCACGCAATCGGAGCACCAGGTGCAGTGTCGATTCCTTCTGGATGTTATAATCTGCC 999055 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | || |||||||| || |||||| | ||||| || || || || || ||| Sbjct 999054 AGAGTCCTACCGTCTTCGAGTTGCTTACCAGCAAAGATCAACCTCTGTTGGTCAGGTGGA 998995 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| || ||||| | || ||| ||| | || | || ||||| || || Sbjct 998994 ATGCCCTCCTTATCTTGGATCTTGGCTTTCACATTATCGATTGTATCAGAGCTCTCGACC 998935 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || ||||||||||| |||||||||||||| |||||||| Sbjct 998934 TCCAAGGTGATTGTTTTGCCAGTCAAGGTTTTAACAAAAATCTGCAT 998888 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||||||| | || |||||||| || || || || || |||| || || Sbjct 998874 CGAAGCACCAAATGCAAAGTAGATTCTTTCTGGATATTGTAGTCAGCAAGAGTACGGCCG 998815 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || |||||| | |||| || || ||||| || || |||||||| || Sbjct 998814 TCCTCAAGCTGCTTACCAGCAAAAATCAGCCTCTGTTGATCAGGAGGGATACCCTCCTTA 998755 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||| || ||| | || | || |||||| ||| || ||||| || || Sbjct 998754 TCTTGGATTTTAGCCTTCACATTGTCAATCGTATCAGAACTTTCCACCTCAAGCGTGATG 998695 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||| | ||| || |||||||| ||||| Sbjct 998694 GTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 998660 >seq21 Length=2013095 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||| || | ||||| ||||| || || ||||| || ||||| || | || | Sbjct 1809899 ACGCAGGACAAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCC 1809840 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || || || | |||| |||||||||||||| ||||||||||| || Sbjct 1809839 ATCCTCCAGCTGCTTCCCTGCGAAAATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTT 1809780 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || |||||| | ||| ||| | || | ||||| || || || || ||||| | Sbjct 1809779 GTCCTG-AATTTTGGCTTTCACATTGTCAATGGTGTCGGAGCTCTCCACCTCCAGAGTGA 1809721 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| |||||||| ||||| || ||||| Sbjct 1809720 TGGTCTTCCCAGTCAAGGTTTTCACAAAGATTTGCAT 1809684 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | ||| |||||||| || | || || || || || |||||||| || || Sbjct 1809682 CCTCCCCTGAGACGAAGCACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCGGCC 1809623 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | || || || || || || || | |||| || ||||| || || || Sbjct 1809622 AGAGTCCTACCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGG 1809563 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | || || ||| | |||| ||||| ||| || || Sbjct 1809562 ATTCCCTCTTTGTCTTGGATCTTAGCCTTTACATTGTCTATGGTGTCCGAACTCTCAACC 1809503 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || ||||| || || || || || || || |||||||| Sbjct 1809502 TCCAGGGTAATGGTTTTCCCGGTCAACGTCTTGACGAAAATCTGCAT 1809456 >seq60 Length=1131370 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | | || |||| ||||| || || || ||||| ||||||||||| ||| Sbjct 437119 CCTCCCCTGAGCCTCAAGACCAGGTGAAGGGTTGACTCCTTTTGGATGTTATAATCTGCA 437178 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| |||||| | ||| || |||||| | || || |||||||| || || || Sbjct 437179 AGTGTTCGACCATCATCCAATTGCTTACCAGCAAAAATTAACCTTTGCTGGTCAGGTGGG 437238 Query 29680 ATACCCTCTTTGTC 29693 ||||| |||||||| Sbjct 437239 ATACCTTCTTTGTC 437252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385214261008332