Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq14 210 4e-49 seq124 154 3e-32 seq15 150 4e-31 seq21 143 5e-29 seq4 138 2e-27 >seq14 Length=2855554 Score = 210 bits (232), Expect = 4e-49 Identities = 185/228 (81%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| ||| || || || |||||||| || ||||| |||||||| || ||||| | Sbjct 999342 CCGCCTCGCAACCGAAGCACCAAGTGCAGTGTCGATTCCTTCTGTATGTTGTAATCTGCC 999283 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | ||||| ||||||||||| || ||||||||||| || || ||||| || || || Sbjct 999282 AGAGTCCTACCATCTTCTAGTTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCAGGTGGG 999223 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || ||||| ||||| ||||| ||||| ||||| ||||| |||||| || | || || Sbjct 999222 ATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTGTCAATGGTATCAG-AGCTCTCCAC 999164 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| ||||||||||||||||| ||||| ||||| |||||||| Sbjct 999163 TTCCAAAGTGATCGTCTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 999116 Score = 170 bits (188), Expect = 4e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | ||| || || || | |||||| || ||||| ||||| || |||||||| | Sbjct 999114 CCACCACGCAATCGGAGCACCAGGTGCAGTGTCGATTCCTTCTGGATGTTATAATCTGCC 999055 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | ||||||||||| ||||| || ||||||||||| | || ||||| || || || Sbjct 999054 AGAGTCCTACCGTCTTCGAGTTGCTTACCAGCAAAGATCAACCTCTGTTGGTCAGGTGGA 998995 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || ||||||||||| ||||| ||||| ||||| || || |||||| || | || || Sbjct 998994 ATGCCCTCCTTATCTTGGATCTTGGCTTTCACATTATCGATTGTATCA-GAGCTCTCGAC 998936 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || || ||||| ||||| || || ||||| |||||||| Sbjct 998935 CTCCAAGGTGATTGTTTTGCCAGTCAAGGTTTTAACAAAAATCTGCAT 998888 Score = 170 bits (188), Expect = 4e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | ||| || || || || |||||||| ||||| || || || || ||||| | | Sbjct 999570 CCACCGCGCAATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 999511 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | |||| || ||||| ||||| || || || ||||| | || ||||| ||||| || Sbjct 999510 AAAGTTCTGCCATCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGG 999451 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || ||||| |||||||||||||| || ||||| ||||| ||||| || | || || Sbjct 999450 ATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATGGTATCGG-AGCTCTCCAC 999392 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| || |||||||| ||||| || || ||||| |||||||| Sbjct 999391 TTCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344 Score = 158 bits (174), Expect = 2e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || || |||| ||||||||||||||| ||||| || |||| ||| | | ||| Sbjct 998874 CGAAGCACCAAATGCAAAGTAGATTCTTTCTGGATATTGTAGTCAGCAAGAGTACGGCCG 998815 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || |||||||| || || || |||||||| ||||| || || |||||| Sbjct 998814 TCCTCAAGCTGCTTACCAGCAAAAATCAGCCTCTGTTGATCAGGAGGGATACCCTCCTTA 998755 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| || || || || ||||| |||||||||||| | ||| || || | || || Sbjct 998754 TCTTGGATTTTAGCCTTCACATTGTCAATCGTATCAGAACTTTCCACCTCAAGCGTGATG 998695 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || | ||||| |||||||| ||||| Sbjct 998694 GTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 998660 Score = 158 bits (174), Expect = 2e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || |||||||| || || ||||| | | | ||| || Sbjct 999786 CGGAGGACGAGGTGGAGGGTCGACTCTTTCTGAATGTTGTAATCCGCCAAAGTTCGCCCA 999727 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || |||||||| ||||||||||| | ||| |||||||||||||| || || ||||| Sbjct 999726 TCCTCCAGTTGTTTCCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTG 999667 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 |||||||||||||| || || || || || || || ||| || ||||| || ||| Sbjct 999666 TCTTGAATCTTTGCCTTCACGTTGTCGATTGTGTCCGAGCTTTCGACCTCCAACGTGATC 999607 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| ||||||| ||||| ||||| |||||||| Sbjct 999606 GTCTTCCCTGTCAGTGTCTTCACAAAGATCTGCAT 999572 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||||||||| ||||| ||||| ||||| | || ||| ||| || || ||||| Sbjct 998634 TGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGACCATCCTCGAGTTGC 998575 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| ||||| || ||||| || || ||||| ||||| || |||||||| |||||| Sbjct 998574 TTACCAGCGAAGATAAGCCTTTGCTGGTCGGGAGGAATTCCCTCTTTATCTTGGATCTTT 998515 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || |||||||| ||||| ||||| | ||| || || | || || || ||||| || Sbjct 998514 GCCTTTACATTGTCAATGGTATCCGAACTTTCCACCTCGAGGGTGATTGTTTTGCCAGTG 998455 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || || || || || ||||| Sbjct 998454 AGAGTTTTCACGAAGATTTGCAT 998432 >seq124 Length=632428 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 ||||| || || ||||| || || || ||||| ||||| || ||||| | || ||| Sbjct 447704 AAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCCAGGGTTCGG 447763 Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 |||||||| || || |||||||| |||||||| || || || || || || ||||||||| Sbjct 447764 CCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGAATTCCTTCC 447823 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || || ||||| || || |||||||| ||||| |||||| | ||| || || | || Sbjct 447824 TTGTCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACCTCAAGGGTA 447883 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| || | || || |||||||||||||| Sbjct 447884 ATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82597 GCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGT 82656 |||| || || ||| ||| || ||||| || |||||||| || | | | | || |||| Sbjct 447024 GCAGTACCAAATGCGAAGTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGT 447083 Query 82657 CTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTAT 82716 |||| ||||| |||||||| || || || || || || ||||| || || || || |||| Sbjct 447084 CTTCCAGTTGCTTTCCAGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTAT 447143 Query 82717 CTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCG 82776 ||||||| || || || || || || || ||||| | || || |||| ||| || | Sbjct 447144 CTTGAATTTTAGCCTTCACGTTGTCGATGGTATCCGAACTCTCAACCTCCAGAGTGATTG 447203 Query 82777 TCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || || || || ||||| ||||| ||||||||| Sbjct 447204 TTTTTCCCGTTAAGGTCTTCACAAAAATCTGCATT 447238 Score = 131 bits (144), Expect = 3e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || |||| || ||||| || || || || || || ||||| | ||| | | || Sbjct 447250 ACGGAGCACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGTCC 447309 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || || || || || || ||||| ||||| || |||||||| || |||||||| Sbjct 447310 ATCTTCAAGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGGAGGGATACCTTCCTT 447369 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| ||||| ||||| ||||| || || ||| || ||||| || || Sbjct 447370 GTCTTGAATCTTAGCTTTGACATTGTCAATTGTGTCGGAGCTTTCAACCTCCAATGTGAT 447429 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || | ||| || || || || |||||| Sbjct 447430 AGTCTTTCCCGTGAGCGTTTTGACGAAAATTTGCATT 447466 >seq15 Length=2492501 Score = 150 bits (166), Expect = 4e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||| | ||| || || | ||| ||||| || || ||||| || || ||||||| Sbjct 255611 ACCACCTCGGAGACGAAGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGC 255670 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | || || || || || || |||||||||||||| | || || || |||||||| Sbjct 255671 CAGAGTCCTCCCATCCTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGG 255730 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTA 82761 ||||| ||||| || |||||||| || || || || ||||||||||| | || | || | Sbjct 255731 AATTCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCAATCGTATC-TGAGCTCTCCA 255789 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||||| || || ||||| || || | ||||| || || ||||||||| Sbjct 255790 CCTCCAAGGTGATGGTCTTCCCGGTAAGGGTCTTCACGAAGATCTGCATT 255839 >seq21 Length=2013095 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | ||| || || ||||||| ||||| || ||||| || ||||| || | Sbjct 1809682 CCTCCCCTGAGACGAAGCACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCGGCC 1809623 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | |||||||| || || || ||||| || ||||| || || || || ||||| || Sbjct 1809622 AGAGTCCTACCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGG 1809563 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| || || ||||| ||||| || |||||||| || || || || | || || Sbjct 1809562 ATTCCCTCTTTGTCTTGGATCTTAGCCTTTACATTGTCTATGGTGTCCGAACTCTCAACC 1809503 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || || || ||||||||||| || || |||||||| Sbjct 1809502 TCCAGGGTAATGGTTTTCCCGGTCAACGTCTTGACGAAAATCTGCAT 1809456 Score = 96.9 bits (106), Expect = 7e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || | |||||| || || || ||||| || |||||||||| Sbjct 1809456 TACCACCACGAAGACGCAAGACAAGGTGCAGGGTCGACTCCTTCTGAATGTTATAATCAG 1809397 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | |||||| || ||||| || || |||||||||||||||||||| || || | Sbjct 1809396 CAAGGGTGCGACCGTCCTCCAGTTGCTTCCCGGCAAAGATTAGTCTTTGTTGGTCCGGGG 1809337 Query 82702 GTATTCCTTCCTT 82714 | || || ||||| Sbjct 1809336 GGATGCCCTCCTT 1809324 >seq4 Length=5448771 Score = 138 bits (152), Expect = 2e-27 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||| || || || || ||||| || || ||||| | ||| ||| ||||| || || || Sbjct 199570 GTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCAAGCTG 199629 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || ||||||||||| || | || || || || |||||||| ||||| || |||||||| Sbjct 199630 CTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGAATCTT 199689 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCGTCTTGCCTG 82785 ||| || ||||| || || ||||| || | || || || | |||||| ||||| || | Sbjct 199690 TGCCTTCACATTGTCGATGGTATC-GGAGCTCTCAACCTCGAGAGTTATGGTCTTCCCCG 199748 Query 82786 TCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || ||||| |||||||| Sbjct 199749 TCAACGTTTTCACAAAGATCTGCAT 199773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981813966196628