Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6 118 1e-21 seq124 114 1e-20 seq14 111 2e-19 seq4 109 5e-19 seq21 102 8e-17 >seq6 Length=5093711 Score = 118 bits (130), Expect = 1e-21 Identities = 349/522 (67%), Gaps = 32/522 (6%) Strand=Plus/Minus Query 120355 TACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATA 120414 ||||| || || | ||||| || ||||| ||||| |||| || ||| || | ||| Sbjct 4852518 TACTCTCCCACCCTCTTCTCGAAGAAGTTGGTTTTCCCCTGCAGCGATATCAATTCCATC 4852459 Query 120415 AACTCGAACGGGTTGCTCGCGTTA-AAGTATTTCGGCTG-GCCCAACTG-TACGAGCAGT 120471 | ||||||||||| | || || | || |||| |||| | | ||| |||| Sbjct 4852458 CAATCGAACGGGTTCTGTACATTGTAAATCTT---GCTGTGCCCTAGGGCTACCAGCAAC 4852402 Query 120472 CGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAACGC 120530 ||||| || || ||||| |||||||||| ||| || || ||||||| |||| |||||| Sbjct 4852401 CGGTCAGCAACGAACTCGATGTACTCGCTCATCAGATCGC-CGTTCATCCCCACCAACGC 4852343 Query 120531 -CACCG----GCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAAC 120585 ||| | ||| ||| ||| || ||| |||| || |||||||||| | || Sbjct 4852342 GCACGGCAGTGCATCGCACACG-----AATTCCCTCTCGATATCCACCGCCTGCCGGACG 4852288 Query 120586 ATGGCGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAG---G 120642 || | || ||| | || || ||| ||| | | | | ||||||| | Sbjct 4852287 ATCCCCTTCACTTTGTCGTCGCTCAG-TTGA-TTC----CTCATCAGAGAGTACAGCAAG 4852234 Query 120643 CACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGG 120702 ||||| || || ||||||||| ||||| || || |||| ||||| || |||| Sbjct 4852233 CACGCGAAATCGCAGTGCAGGCCTTCGTCTCGGGAGATCAATTCGTTTGAGAATGTCAAT 4852174 Query 120703 CCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAAC 120762 || ||||| | |||| |||| | ||||||||||| || || ||||| ||||| Sbjct 4852173 CCTGGCATAAGGCCTCGTTTCTTCAGCCAGAATATGGCGCAGAAACTTCCCGAGAAGAAA 4852114 Query 120763 ACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCG 120822 | || ||||| || ||| | | || ||||| || |||| | | | || |||| Sbjct 4852113 ATACCTTCCACACATGCGAAGCCAATCAGACGCTCTGCAAACGACTCGG---AGCCGTCG 4852057 Query 120823 ATCCACTTCATGGCCCACTCGGCCTT-TTTGCGCACGCACGG 120863 ||||| || | ||||||||||| || || ||| ||||| || Sbjct 4852056 ATCCATTTTAGCGCCCACTCGGCTTTCTTCGCG-ACGCAAGG 4852016 >seq124 Length=632428 Score = 114 bits (126), Expect = 1e-20 Identities = 148/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||| ||||| ||||||||| ||| || || | ||| ||||||||||| | Sbjct 447725 GTGGACTCTTTTTGTATGTTGTAATCGGCCAGGGTTCGGCC--GTCTTCGAGCTGCTTTC 447782 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-C 133580 | ||| | || |||| ||||||||| || || || ||||||||||| ||| ||| | | Sbjct 447783 CAGCGAAGATTAGCCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTC-CTGAATTTTGGCC 447841 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | |||| || || | || || || | ||| | ||||||||||| ||| Sbjct 447842 TTTACATTGTCAATAGTATCAGAACTTTCAACCTCAAGGGTAATTGTTTTGCCGGTGAGA 447901 Query 133641 GTTTTTACGAAAATCTGCAT 133660 ||||| || || |||||||| Sbjct 447902 GTTTTCACAAATATCTGCAT 447921 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || || ||||||||| | | || | | | || || ||||||||||| Sbjct 447269 GTTGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGTCCA-TCTTCAAGCTGCTTGCC 447327 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| |||| |||||||| |||||||| ||||||||||| ||||| || Sbjct 447328 TGCGAAAATTAGCCTTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGAATCTTAGCTTT 447387 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||||| | || || || | |||| || || || || || || Sbjct 447388 GACATTGTCAATTGTGTCGGAGCTTTCAACCTCCAATGTGATAGTCTTTCCCGTGAGCGT 447447 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||| ||||| Sbjct 447448 TTTGACGAAAATTTGCAT 447465 >seq14 Length=2855554 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| |||||||||||| | | || ||| | |||||||| ||||| || Sbjct 998628 GTAGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGACCA-TCCTCGAGTTGCTTACC 998570 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| |||||||||||||| || || || || || ||||||| ||| Sbjct 998569 AGCGAAGATAAGCCTTTGCTGGTCGGGAGGAATTCCCTCTTTATCTTGGATCTTTGCCTT 998510 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| || || | ||||| |||| ||||| |||||||| || ||||| Sbjct 998509 TACATTGTCAATGGTATCCGAACTTTCCACCTCGAGGGTGATTGTTTTGCCAGTGAGAGT 998450 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| || ||||| Sbjct 998449 TTTCACGAAGATTTGCAT 998432 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || ||||| |||||||| ||| | || | || ||| ||||| || |||||||| |||||| Sbjct 999498 TCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGGATGCCCTCCTTG 999439 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | |||| || |||| | |||||| || | |||| Sbjct 999438 TCTTGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCCACTTCCAAAGTGATT 999379 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| |||| ||||| || ||||||||||| Sbjct 999378 GTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGG-ACGAGTCCTCGAGCTGCTTGCC 133522 || || || |||||||| |||||||| ||| || || | || || || ||||| || Sbjct 999312 GTCGATTCCTTCTGTATGTTGTAATCTGCCAGAGTCCTACCA-TCTTCTAGTTGCTTACC 999254 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||| ||||| || |||||||| |||||||| |||||| || Sbjct 999253 AGCAAAGATCAGCCTCTGTTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCTTT 999194 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| || || | | |||||| || | |||| || ||||| |||| || Sbjct 999193 CACATTGTCAATGGTATCAGAGCTCTCCACTTCCAAAGTGATCGTCTTGCCTGTCAAGGT 999134 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 999133 CTTCACAAAAATCTGCAT 999116 >seq4 Length=5448771 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTG 133516 |||| ||||||||||||||| || ||||| ||| | | || ||| | ||||| ||||| Sbjct 205246 TGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGACCA-TCCTCCAGCTG 205304 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || ||||||| ||||||||||| || || || || |||||||| ||||| Sbjct 205305 CTTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGAATCTT 205364 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | || | || || | ||| || |||| || | ||| || || || Sbjct 205365 GGCCTTCACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCTGT 205424 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| ||||| |||||||| Sbjct 205425 CAGCGTTTTCACGAAGATCTGCAT 205448 Score = 102 bits (112), Expect = 8e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 |||||||| ||||| || ||||||||| | | || || || ||||| |||||||| | Sbjct 199577 GTGGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCG--TCCTCAAGCTGCTTAC 199634 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| ||||||||||| || || || || |||||||| |||||| || Sbjct 199635 CAGCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGAATCTTTGCCT 199694 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | || |||| | ||| || |||| || | ||| || || |||| | Sbjct 199695 TCACATTGTCGATGGTATCGGAGCTCTCAACCTCGAGAGTTATGGTCTTCCCCGTCAACG 199754 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || |||||||| Sbjct 199755 TTTTCACAAAGATCTGCAT 199773 >seq21 Length=2013095 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| ||||| || || || ||| ||| || |||||| ||| Sbjct 1809661 AAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTACCGTCCTCCAGC 1809602 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || |||| ||||||||| || ||||| || || ||||| |||| Sbjct 1809601 TGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGGATC 1809542 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | || | ||||| | ||| || || | ||| | |||||| ||| Sbjct 1809541 TTAGCCTTTACATTGTCTATGGTGTCCGAACTCTCAACCTCCAGGGTAATGGTTTTCCCG 1809482 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || |||||||||||||| Sbjct 1809481 GTCAACGTCTTGACGAAAATCTGCAT 1809456 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| ||||||||||| | | || ||||| |||||||| || Sbjct 1809880 GTGGACTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTGCTTCCCT 1809821 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TT 133582 ||| |||| |||| ||||| || ||||| || || |||||||| ||| ||| || || Sbjct 1809820 GCGAAAATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTC-CTGAATTTTGGCTTT 1809762 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||||| | |||||| || | |||| ||| || || |||| || Sbjct 1809761 CACATTGTCAATGGTGTCGGAGCTCTCCACCTCCAGAGTGATGGTCTTCCCAGTCAAGGT 1809702 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || || || ||||| Sbjct 1809701 TTTCACAAAGATTTGCAT 1809684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483414443016480