Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq124 93.3 3e-14
seq4 91.5 1e-13
seq14 86.0 4e-12
>seq124
Length=632428
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | ||||| | |||||| || || ||| |||||||||||||||||||||||
Sbjct 447695 CCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCC 447754
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || || |||| || | || ||||| || || || | | |||||| || | ||
Sbjct 447755 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGA 447814
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||| ||||| |||||| | | |||| ||| | || || ||| ||
Sbjct 447815 ATTCCTTCCTTGTCCTGAATTTT-GGCCTTTACATTGTCAATAGTATCAGAACTTTCAAC 447873
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| || || ||||| || || | ||||| ||||| ||||||||
Sbjct 447874 CTCAAGGGTAATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921
>seq4
Length=5448771
Score = 91.5 bits (100), Expect = 1e-13
Identities = 164/236 (69%), Gaps = 3/236 (1%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | | | |||||| | || || ||| ||| || || |||||||||||||
Sbjct 199545 CACCACCACGGAGCCTTAACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGG 199604
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
|| || || |||| || | || || || ||||| || | ||||||||| || |||
Sbjct 199605 CTAGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCG 199664
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | || || ||||| ||| || || | |||| ||| | ||| ||| ||
Sbjct 199665 GTATTCCCTCCTTGTCCTGAATCTT-TGCCTTCACATTGTCGATGGTATCGGAGCTCTCA 199723
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGG 33755
|| || | || || || || || || |||||||| ||||||||||||||| ||||
Sbjct 199724 ACCTCGAGAGTTATGGTCTTCCCCGTCAACGTTTTCACAAAGATCTGCATA-TTGG 199778
>seq14
Length=2855554
Score = 86.0 bits (94), Expect = 4e-12
Identities = 139/196 (71%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617
|||||| || ||||||||||| | | || || | || |||| |||||| || |||||
Sbjct 999763 CTCTTTCTGAATGTTGTAATCCGCCAAAGTTCGCCCATCCTCCAGTTGTTTCCCAGCAAA 999704
Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677
||||| | ||| |||||| | || | || || ||||| ||| || || | || |
Sbjct 999703 GATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCTTGAATCTT-TGCCTTCACGT 999645
Query 33678 AGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTT 33733
||| | ||||| ||| ||| || || | ||||||||| || ||||| | || |
Sbjct 999644 TGTCGATTGTGTCCGAGCT---TTCGACCTCCAACGTGATCGTCTTCCCTGTCAGTGTCT 999588
Query 33734 TTACAAAGATCTGCAT 33749
| ||||||||||||||
Sbjct 999587 TCACAAAGATCTGCAT 999572
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328699785603840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |