Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq124 93.3 3e-14 seq4 91.5 1e-13 seq14 86.0 4e-12 >seq124 Length=632428 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||||| | |||||| || || ||| ||||||||||||||||||||||| Sbjct 447695 CCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCC 447754 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | || ||||| || || || | | |||||| || | || Sbjct 447755 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGA 447814 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| | | |||| ||| | || || ||| || Sbjct 447815 ATTCCTTCCTTGTCCTGAATTTT-GGCCTTTACATTGTCAATAGTATCAGAACTTTCAAC 447873 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || ||||| || || | ||||| ||||| |||||||| Sbjct 447874 CTCAAGGGTAATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921 >seq4 Length=5448771 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/236 (69%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | | |||||| | || || ||| ||| || || ||||||||||||| Sbjct 199545 CACCACCACGGAGCCTTAACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGG 199604 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || || || |||| || | || || || ||||| || | ||||||||| || ||| Sbjct 199605 CTAGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCG 199664 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| ||| || || | |||| ||| | ||| ||| || Sbjct 199665 GTATTCCCTCCTTGTCCTGAATCTT-TGCCTTCACATTGTCGATGGTATCGGAGCTCTCA 199723 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGG 33755 || || | || || || || || || |||||||| ||||||||||||||| |||| Sbjct 199724 ACCTCGAGAGTTATGGTCTTCCCCGTCAACGTTTTCACAAAGATCTGCATA-TTGG 199778 >seq14 Length=2855554 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || ||||||||||| | | || || | || |||| |||||| || ||||| Sbjct 999763 CTCTTTCTGAATGTTGTAATCCGCCAAAGTTCGCCCATCCTCCAGTTGTTTCCCAGCAAA 999704 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||||| | ||| |||||| | || | || || ||||| ||| || || | || | Sbjct 999703 GATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCTTGAATCTT-TGCCTTCACGT 999645 Query 33678 AGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTT 33733 ||| | ||||| ||| ||| || || | ||||||||| || ||||| | || | Sbjct 999644 TGTCGATTGTGTCCGAGCT---TTCGACCTCCAACGTGATCGTCTTCCCTGTCAGTGTCT 999588 Query 33734 TTACAAAGATCTGCAT 33749 | |||||||||||||| Sbjct 999587 TCACAAAGATCTGCAT 999572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328699785603840