Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq124 143 6e-29 seq14 141 2e-28 seq15 129 1e-24 seq21 125 2e-23 seq4 120 7e-22 >seq124 Length=632428 Score = 143 bits (158), Expect = 6e-29 Identities = 151/196 (77%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||||||||| ||||| || ||||| ||||| || ||||| || |||||| | || Sbjct 447451 CAAAACGCTCACGGGAAAGACTATCACATTGGAGGTTGAAAGCTCCGACACAATTGACAA 447392 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| || ||||||||| || ||||| || || ||| ||||| || || | Sbjct 447391 TGTCAAAGCTAA-GATTCAAGACAAGGAAGGTATCCCTCCAGACCAGCAAAGGCTAATTT 447333 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||| || |||||| | ||||||||| ||||| | |||||||||||| | || || |||| Sbjct 447332 TCGCAGGCAAGCAGCTTGAAGATGGACGGACTCTTGCCGATTACAACATTCAAAAGGAGT 447273 Query 206363 CTACTCTTCACCTTGT 206378 | |||||||| || || Sbjct 447272 CAACTCTTCATCTAGT 447257 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||||| ||||| || ||||| || || | || || ||||||||||| Sbjct 447918 CAGATATTTGTGAAAACTCTCACCGGCAAAACAATTACCCTTGAGGTTGAAAGTTCTGAT 447859 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || |||||| || ||||| || || ||||||||| |||||| || Sbjct 447858 ACTATTGACAATGTAAAGGCCAAAATTCAGGACAAGGAAGGAATTCCACCGGACCAGCAG 447799 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || |||||||| ||||||||| | ||||| || | || |||||||||||||| | Sbjct 447798 AGGCTAATCTTCGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTGGCCGATTACAACATA 447739 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || |||||||| || || ||| Sbjct 447738 CAAAAAGAGTCCACGCTCCAC 447718 Score = 116 bits (128), Expect = 9e-21 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAG-TGGAAAGTTCTGACACAGTCGAATC 206243 ||||| ||||| |||||||| ||||| ||||| | ||||||| ||||| || |||| Sbjct 354275 AAAACCCTCACTGGAAAAACCATCACCTTGGAGGGTGGAAAGCTCTGATACCATCGACAA 354334 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || || ||||| ||||||||||| || || || ||| || || | || || Sbjct 354335 TGTGAARGCCAAGAT-CAAGAAAAAGAGGGCATCCCACCAGACCAGCAGAGGTTGATTTT 354393 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| |||||||| ||||| | || |||||||||||||| || ||| | || |||||||| Sbjct 354394 CGCTGGAAAGCAACTGGAACACGGCAGGACTTTGGCCGACTATAACATTCAAAAAGAGTC 354453 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| | || | || || | ||||| Sbjct 354454 GACTTTGCATTTGGTACTGCGTCTTCG 354480 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || |||||||| |||||| |||| || || ||||| || Sbjct 447234 CAGATTTTTGTGAAGACCTTAACGGGAAAAACAATCACTCTGGAGGTTGAGAGTTCGGAT 447175 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| || |||||||| ||||| || || || ||| || Sbjct 447174 ACCATCGACAACGTGAAGGCTAAAATTCAAGATAAAGAGGGCATCCCACCAGACCAGCAG 447115 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || || ||||| |||||||| ||||||| || |||||||||||||| || || | Sbjct 447114 AGGCTGATTTTCGCTGGAAAGCAACTGGAAGACGGCAGGACTTTGGCCGACTATAATATT 447055 Query 206353 CAGAAAGAGTCTACT 206367 || |||||||| ||| Sbjct 447054 CAAAAAGAGTCGACT 447040 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 204775 AGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 204834 ||| |||||||| || | ||||||||| ||||||||||| || |||||||| |||||||| Sbjct 447040 AGTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGTCTTCCAGTTGCTTTCC 447099 Query 204835 GGCGAAGATAAGCC 204848 ||||| || |||| Sbjct 447100 AGCGAAAATCAGCC 447113 >seq14 Length=2855554 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| ||||| | || ||||||||||| || || | || Sbjct 998447 AAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGTTCGGATACCATTGACAAT 998506 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| |||||| ||||| ||||| |||||| || ||| ||||| ||||||||| Sbjct 998507 GTAAAGGCAAAGATCCAAGATAAAGAGGGAATTCCTCCCGACCAGCAAAGGCTTATCTTC 998566 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| | || ||||| | || | ||||||||||| ||||||| || ||| Sbjct 998567 GCTGGTAAGCAACTCGAGGATGGTCGAACCCTTGCCGATTACAATATCCAGAAGGAATCT 998626 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| || || | |||||||| Sbjct 998627 ACTCTTCATCTGGTGCTTAGACTTCG 998652 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || ||||| || |||||||| ||||| || ||||| || ||| Sbjct 999575 CAGATCTTTGTGAAGACACTGACAGGGAAGACGATCACGTTGGAGGTCGAAAGCTCGGAC 999634 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| |||||||||||| || || || ||| || || || Sbjct 999635 ACAATCGACAACGTGAAGGCAAAGATTCAAGACAAGGAGGGGATTCCTCCAGATCAACAG 999694 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| || || || || |||| ||||| | |||||||| ||||||||| | Sbjct 999695 AGATTGATCTTTGCTGGGAAACAACTGGAGGATGGGCGAACTTTGGCGGATTACAACATT 999754 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || || ||||| || Sbjct 999755 CAGAAAGAGTCGACCCTCCACCTCGT 999780 Score = 109 bits (120), Expect = 1e-18 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | ||||| || |||||||||||||||||||| || ||||| Sbjct 999119 CAGATTTTTGTGAAGACCTTGACAGGCAAGACGATCACTTTGGAAGTGGAGAGCTCTGAT 999178 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| ||||| ||||| || || || || || ||| || Sbjct 999179 ACCATTGACAATGTGAAAGC-CAAGATCCAAGACAAGGAGGGCATCCCACCTGACCAACA 999237 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || || ||||| || || ||||| | |||||||| |||||| |||| ||||||||| | Sbjct 999238 GAGGCTGATCTTTGCTGGTAAGCAACTAGAAGATGGTAGGACTCTGGCAGATTACAACAT 999297 Query 206352 CCAGAAAGAGTCTACTCTTCAC 206373 ||||| || || || || ||| Sbjct 999298 ACAGAAGGAATCGACACTGCAC 999319 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || || || || ||||||||||||||||| || || || Sbjct 999347 CAGATTTTTGTGAAAACCTTGACTGGCAAGACAATCACTTTGGAAGTGGAGAGCTCCGAT 999406 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||||||| || || || || || ||| || Sbjct 999407 ACCATTGATAATGTGAAGGCAAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAACAG 999466 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | |||||||| || ||||| | |||||||| || ||||| || ||||||||| || Sbjct 999467 AGGTTGATCTTCGCAGGCAAGCAACTCGAAGATGGCAGAACTTTAGCAGATTACAACATC 999526 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || || || || ||||| || Sbjct 999527 CAAAAGGAATCAACTCTGCA 999546 >seq15 Length=2492501 Score = 129 bits (142), Expect = 1e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| ||||| ||||| || || || || | || Sbjct 255823 AAGACCCTTACCGGGAAGACCATCACCTTGGAGGTGGAGAGCTCAGATACGATTGACAAC 255764 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || |||||| || ||| || || | ||||| Sbjct 255763 GTGAAGGCGAAGATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGAGGTTGATCTTT 255704 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||||||| |||| ||||| |||||| |||| ||||||||| ||||||| ||||| Sbjct 255703 GCTGGAAAGCAGCTGGAGGATGGGAGGACTCTGGCTGATTACAACATCCAGAAGGAGTCC 255644 Query 206365 ACTCTTCACCTTGT 206378 |||||||||||||| Sbjct 255643 ACTCTTCACCTTGT 255630 Score = 95.1 bits (104), Expect = 3e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||||||||| ||||| ||||||| || || ||||||| |||||| ||||| ||| Sbjct 255630 ACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCCAGAGTCCTCCCATCCTCC 255689 Query 204824 AGCTGCTTTCCGGCGAAGAT 204843 ||||||||||| || ||||| Sbjct 255690 AGCTGCTTTCCAGCAAAGAT 255709 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||||||||| |||||||||||||| | || |||||||| | ||||||||||| || Sbjct 255858 ACAAGGTGAAGGGTAGACTCTTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCA 255917 Query 204824 AGCTGCTTTCCGGC 204837 |||||||||||||| Sbjct 255918 AGCTGCTTTCCGGC 255931 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | || ||||||||||| | || || |||||| | |||||||||||| Sbjct 255931 GCCGGAAAGCAGCTTGAGGATGGAAGGACCCTTGCTGACTACAACATTCAGAAAGAGTCT 255872 Query 206365 ACTCTTCACCTTGT 206378 || ||||||||||| Sbjct 255871 ACCCTTCACCTTGT 255858 >seq21 Length=2013095 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||| | || || ||||| || || |||| || || ||||| ||| Sbjct 1809459 CAGATTTTCGTCAAGACGTTGACCGGGAAAACCATTACCCTGGAGGTTGAGAGTTCGGAC 1809518 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || |||||| ||||| ||||| ||||| ||||| || ||| || Sbjct 1809519 ACCATAGACAATGTAAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCAGACCAGCAG 1809578 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || |||||||||||||||||| |||| || || |||||| ||||||| || ||| || Sbjct 1809579 AGGCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGTAGGACTCTGGCCGACTATAACATC 1809638 Query 206353 CAGAAAGAGTCTAC 206366 ||||| |||||||| Sbjct 1809639 CAGAAGGAGTCTAC 1809652 Score = 123 bits (136), Expect = 6e-23 Identities = 146/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || || || |||||| |||| ||||| || || ||||| | || Sbjct 1809699 AAAACCTTGACTGGGAAGACCATCACTCTGGAGGTGGAGAGCTCCGACACCATTGACAAT 1809758 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| ||||| || || || || ||| ||||| ||||| || || || Sbjct 1809759 GTGAAAGCCAAA-ATTCAGGACAAGGAGGGTATTCCTCCGGATCAGCAAAGGCTGATTTT 1809817 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| |||| |||||||||||| | || |||||||| | ||||| ||||| Sbjct 1809818 CGCAGGGAAGCAGCTGGAGGATGGAAGGACTCTCGCTGATTACAATATTCAGAAGGAGTC 1809877 Query 206364 TACTCTTCACCTTGT 206378 |||||||||||||| Sbjct 1809878 CACTCTTCACCTTGT 1809892 Score = 100 bits (110), Expect = 7e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||||||||| ||||| ||||| | ||| || ||||| | |||||||||||| ||| Sbjct 1809892 ACAAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCATCCTCC 1809833 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || ||||| || |||| ||| ||| Sbjct 1809832 AGCTGCTTCCCTGCGAAAATCAGCCTTTGCTGA 1809800 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 204776 GTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 204835 |||||||| ||||||| |||||||| |||| |||||| || || ||||||||||||||| Sbjct 1809652 GTAGACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTACCGTCCTCCAGCTGCTTTCCG 1809593 Query 204836 GCGAAGATAAGCC 204848 |||||||| |||| Sbjct 1809592 GCGAAGATCAGCC 1809580 >seq4 Length=5448771 Score = 120 bits (132), Expect = 7e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||||| ||||| || || || ||| | || || || |||||||| || |||| Sbjct 205433 AAAACGCTGACAGGGAAGACCATAACTCTCGAGGTCGAGAGTTCTGATACCATCGATAAT 205374 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || ||||| ||||||| || | || || || Sbjct 205373 GTGAAGGCCAAGATTCAGGACAAGGAGGGAATACCGCCGGACCAGCAGCGTCTCATTTTT 205314 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||| ||||| | ||| | ||||| |||||| ||||||||||||| Sbjct 205313 GCTGGTAAGCAGCTGGAGGATGGTCGAACTCTTGCCGACTACAACATCCAGAAAGAGTCC 205254 Query 206365 ACTCTTCACCTTGT 206378 || || |||||||| Sbjct 205253 ACCCTACACCTTGT 205240 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| | || || || || || ||| | || || || || || || Sbjct 199770 CAGATCTTTGTGAAAACGTTGACGGGGAAGACCATAACTCTCGAGGTTGAGAGCTCCGAT 199711 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||| || || || ||||| ||||||| || Sbjct 199710 ACCATCGACAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATACCGCCGGACCAGCAG 199651 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| | || || || | || | |||||||||||| || Sbjct 199650 CGTCTCATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGAACCCTAGCCGATTACAACATC 199591 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || || ||||| || || || || || Sbjct 199590 CAGAAGGAGTCCACGCTCCACCTCGTGTTAAGGCTCCG 199553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181804870532892